BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB01FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1480 1548 0.0
>3x_Contig1480
Length = 8659
Score = 1548 bits (781), Expect = 0.0
Identities = 848/861 (98%), Gaps = 7/861 (0%)
Strand = Plus / Minus
Query: 87 agtagaaagatgccaaataaaacaggaagcatagccgatctattgaccgttcatttagtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2799 agtagaaagatgccaaataaaacaggaagcatagccgatctattgaccgttcatttagtt 2740
Query: 147 aattagcgatttatatatattcatacttattttatgcattcattcagtcagattcttgga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2739 aattagcgatttatatatattcatacttattttatgcattcattcagtcagattcttgga 2680
Query: 207 atgatgcatcggagtttgcttcttcatcatcgtcatctaagaaactgtcgtctgataaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2679 atgatgcatcggagtttgcttcttcatcatcgtcatctaagaaactgtcgtctgataaat 2620
Query: 267 cctgtgtgtagttggacttcgtagtttgagtcaatcttggacttctctttcgtggttgag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2619 cctgtgtgtagttggacttcgtagtttgagtcaatcttggacttctctttcgtggttgag 2560
Query: 327 agggtaagttttcaagaatatcaagatcactttcatcgctcagtgagactagatctgctg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2559 agggtaagttttcaagaatatcaagatcactttcatcgctcagtgagactagatctgctg 2500
Query: 387 tctgcgaattttgtttccttgttgtctttttcttgcctgctagaatcttttcgtcatcgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2499 tctgcgaattttgtttccttgttgtctttttcttgcctgctagaatcttttcgtcatcgt 2440
Query: 447 cgtcgtcgtctttgagaggagagattcctacagtatcctgggatttagacgctatggatg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2439 cgtcgtcgtctttgagaggagagattcctacagtatcctgggatttagacgctatggatg 2380
Query: 507 gaataggagacgcggacgtggaatcgccattatcattg-aacgcagagctcaattttttg 565
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2379 gaataggagacgcggacgtggaatcgccattatcattgaaacgcagagctcaattttttg 2320
Query: 566 aatttactggaaaatacgctgaactcatcattgtcttcctcgggttccttagagactgaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2319 aatttactggaaaatacgctgaactcatcattgtcttcctcgggttccttagagactgaa 2260
Query: 626 tccgccttctttgcaaagatggtactagcatgagaggcggttggttctggatcttctttg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2259 tccgccttctttgcaaagatggtactagcatgagaggcggttggttctggatcttctttg 2200
Query: 686 acctctggggtcgtttgtttagtggattttgcctttg-aagtttctttacaatatcgttg 744
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2199 acctctggggtcgtttgtttagtggattttgcctttgaaagtttctttacaatatcgttg 2140
Query: 745 ttttcagttttaatttttggtacccttttaaccttttcaat-actcttggttcgattaaa 803
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2139 ttttcagttttaatttttggtacccttttaaccttttcaataactcttggttcgattaaa 2080
Query: 804 actctttcaaaatc-acatattctctcttgacagattttctggctc-tttttttggttgt 861
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2079 actctttcaaaatcaacatattctctcttgacagattttctggctcttttttttggttgt 2020
Query: 862 tttgaatcattggcatcgtttttaccgcgctttcttctc-tacccttc-tggtgggtgct 919
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct: 2019 tttgaatcattgtcatcgtttttaccgcgctttcttctcttacccttcttggtggtggct 1960
Query: 920 gcatcggggaaaatgctgtta 940
|||||||| | |||||||||
Sbjct: 1959 gcatcgggaacgatgctgtta 1939
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8245
Number of Sequences: 1807
Number of extensions: 8245
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)