BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB01RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1752 0.0
>3x_Contig1780
Length = 27883
Score = 1752 bits (884), Expect = 0.0
Identities = 911/918 (99%), Gaps = 2/918 (0%)
Strand = Plus / Plus
Query: 47 tggcactgttagctaaagtgcttgcatcaaacaatggcgactttgaatttgcaataagtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17816 tggcactgttagctaaagtgcttgcatcaaacaatggcgactttgaatttgcaataagtt 17875
Query: 107 catcgtccagtgtaggaatatccaatggtctggaatttgccaaggccatcttgaaaaaga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17876 catcgtccagtgtaggaatatccaatggtctggaatttgccaaggccatcttgaaaaaga 17935
Query: 167 taaattaatgaaggatattttttgcaactgagttaaaaatattgacggttggaaaaaata 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17936 taaattaatgaaggatattttttgcaactgagttaaaaatattgacggttggaaaaaata 17995
Query: 227 tagatattgttaaagaactttcaaagaaaagaacacttcaacttaacaatgtaaggtctg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17996 tagatattgttaaagaactttcaaagaaaagaacacttcaacttaacaatgtaaggtctg 18055
Query: 287 agaaaaaaatgaaataaaatattgctgttgtgaatcagtaccttggtgatgtttcgataa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18056 agaaaaaaatgaaataaaatattgctgttgtgaatcagtaccttggtgatgtttcgataa 18115
Query: 347 aaaaaaagataaaagggcccagaataattaattaaaatctcttagacaccaaaacaggga 406
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 18116 aaaaaaagataaaagggcccagaataattaattaatatctcttagacaccaaaacaggga 18175
Query: 407 aattatgaaggaattcttgtataaactgcacttaccagtatgataaatgtattggcagct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18176 aattatgaaggaattcttgtataaactgcacttaccagtatgataaatgtattggcagct 18235
Query: 467 attccaacctacttcttgagcctgtatcaatagatatattttctcaataaaaatatgtcg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18236 attccaacctacttcttgagcctgtatcaatagatatattttctcaataaaaatatgtcg 18295
Query: 527 tttcagaggggaaaaacgacgctgacacaacacaggaacagttggtaagaaaaaagaatt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18296 tttcagaggggaaaaacgacgctgacacaacacaggaacagttggtaagaaaaaagaatt 18355
Query: 587 gctaaaatcaaacacaaatgggtttacggaaccgtcaaatgatcctgactccagtgttat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18356 gctaaaatcaaacacaaatgggtttacggaaccgtcaaatgatcctgactccagtgttat 18415
Query: 647 ttcctagataatccagaaacaaaaagacaccacggccgtcaagttaaggtttggtttttt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18416 ttcctagataatccagaaacaaaaagacaccacggccgtcaagttaaggtttggtttttt 18475
Query: 707 ttcaaaacttaacggacttctgattcaaacagatagagataaaaaaaaggcagaactatg 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18476 ttcaaaacttaacggacttctgattcaaacagatagagataaaaaaaaggcagaactatg 18535
Query: 767 aaggatgctagcagctatgcgttccaacaagatcggctttttcactagtttgtataactg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18536 aaggatgctagcagctatgcgttccaacaagatcggctttttcactagtttgtataactg 18595
Query: 827 tcactttggg-tttcaatnatcagttagcaagagtggaattgcaagaagntccactcaag 885
|||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 18596 tcactttgggttttcaataatcagttagcaagagtggaattgcaagaagttccactcaag 18655
Query: 886 -tgaatatgacttaaatcggataagtgacgaattacgcagagaacgattggatttttaga 944
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 18656 ttgaatatgacttaaatcggataagtgacgaattacgcagagaacgattagattttcaga 18715
Query: 945 ttgtcaaaaaaaaaaaaa 962
||||||||||||||||||
Sbjct: 18716 ttgtcaaaaaaaaaaaaa 18733
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,969
Number of Sequences: 1807
Number of extensions: 16969
Number of successful extensions: 135
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)