BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZB02RM1.SCF screened BAC_end
         (939 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1224                                                        1657   0.0  

>3x_Contig1224 
          Length = 5948

 Score = 1657 bits (836), Expect = 0.0
 Identities = 871/881 (98%), Gaps = 2/881 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tgaagtccaaatcacgaactcataagccgactgaacataaatttgcatctgaagagtcaa 107
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 tgaagtccaaatcacgaac-cataagccgactgaacataaatttgcatctgaagagtcaa 3952

                                                                        
Query: 108  attgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttca 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3953 attgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttca 4012

                                                                        
Query: 168  aattccagtcagtactgttgcatccgcctattcggctaccagtaccgaatttttgactat 227
            ||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||
Sbjct: 4013 aattccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactat 4072

                                                                        
Query: 228  taatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgattt 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4073 taatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgattt 4132

                                                                        
Query: 288  tggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataa 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4133 tggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataa 4192

                                                                        
Query: 348  atgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcg 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4193 atgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcg 4252

                                                                        
Query: 408  acaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatc 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4253 acaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatc 4312

                                                                        
Query: 468  ttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataa 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4313 ttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataa 4372

                                                                        
Query: 528  tcgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4373 tcgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaa 4432

                                                                        
Query: 588  cgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggtttta 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4433 cgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggtttta 4492

                                                                        
Query: 648  ggtttataacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaat 707
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4493 ggtttatcacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaat 4552

                                                                        
Query: 708  tcgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttgacc 767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4553 tcgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttgacc 4612

                                                                        
Query: 768  attcaatctgtgtgaacttagaatatntcatatcccgcggtagatcggcatagttggtac 827
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4613 attcaatctgtgtgaacttagaatatttcatatcccgcggtagatcggcatagttggtac 4672

                                                                        
Query: 828  catctttcaatttaaactggttaatggtttttaatgaccagnaacattgattaatatcgt 887
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4673 catctttcaatttaaactggttaatggtttttaatgaccagaaacattgattaatatcgt 4732

                                                     
Query: 888  cgtatcctataatattgggaatggtcgntacttttattcca 928
            |||||||||||||| |||||||||||| |||||||||||||
Sbjct: 4733 cgtatcctataata-tgggaatggtcgttacttttattcca 4772


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7027
Number of Sequences: 1807
Number of extensions: 7027
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)