BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC20ZB02RM1.SCF screened BAC_end (939 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1224 1657 0.0 >3x_Contig1224 Length = 5948 Score = 1657 bits (836), Expect = 0.0 Identities = 871/881 (98%), Gaps = 2/881 (0%) Strand = Plus / Plus Query: 48 tgaagtccaaatcacgaactcataagccgactgaacataaatttgcatctgaagagtcaa 107 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 3894 tgaagtccaaatcacgaac-cataagccgactgaacataaatttgcatctgaagagtcaa 3952 Query: 108 attgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttca 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3953 attgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttca 4012 Query: 168 aattccagtcagtactgttgcatccgcctattcggctaccagtaccgaatttttgactat 227 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 4013 aattccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactat 4072 Query: 228 taatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgattt 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4073 taatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgattt 4132 Query: 288 tggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataa 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4133 tggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataa 4192 Query: 348 atgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcg 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4193 atgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcg 4252 Query: 408 acaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatc 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4253 acaaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatc 4312 Query: 468 ttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataa 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4313 ttgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataa 4372 Query: 528 tcgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaa 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4373 tcgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaa 4432 Query: 588 cgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggtttta 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4433 cgaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggtttta 4492 Query: 648 ggtttataacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaat 707 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4493 ggtttatcacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaat 4552 Query: 708 tcgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttgacc 767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4553 tcgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttgacc 4612 Query: 768 attcaatctgtgtgaacttagaatatntcatatcccgcggtagatcggcatagttggtac 827 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 4613 attcaatctgtgtgaacttagaatatttcatatcccgcggtagatcggcatagttggtac 4672 Query: 828 catctttcaatttaaactggttaatggtttttaatgaccagnaacattgattaatatcgt 887 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 4673 catctttcaatttaaactggttaatggtttttaatgaccagaaacattgattaatatcgt 4732 Query: 888 cgtatcctataatattgggaatggtcgntacttttattcca 928 |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 4733 cgtatcctataata-tgggaatggtcgttacttttattcca 4772 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7027 Number of Sequences: 1807 Number of extensions: 7027 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 939 length of database: 10,358,551 effective HSP length: 16 effective length of query: 923 effective length of database: 10,329,639 effective search space: 9534256797 effective search space used: 9534256797 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)