BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB03RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 1076 0.0
3x_Contig1655 349 6e-96
>3x_Contig1543
Length = 9648
Score = 1076 bits (543), Expect = 0.0
Identities = 626/643 (97%), Gaps = 9/643 (1%)
Strand = Plus / Minus
Query: 291 tggttctaaagtatcagattctatatcaatttcgatagcagaatcctggctaatagcatt 350
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 9613 tggttctaaagtatcagatgctatatcaatgtcgatagcagaatcctggctaatagcatt 9554
Query: 351 gacagtagtagccttgtcaactttcccagtgttctgaaagaatgagagaatgccccgtct 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 gacagtagtagccttgtcaactttcccagtgttctgaaagaatgagagaatgccccgtct 9494
Query: 411 cttctggttcgatactgatggtttcatttcactcatggttgggctaccgacgtattgcaa 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 cttctggttcgatactgatggtttcatttcactcatggttgggctaccgacgtattgcaa 9434
Query: 471 agatgacaagattatcaaaggtatatgtgttcagcagcttatgccaggctcctattgagg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433 agatgacaagattatcaaaggtatatgtgttcagcagcttatgccaggctcctattgagg 9374
Query: 531 cggtttgtagagcctcagcgtcttgtcattgaatggtgatctgtataacttctctagtga 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 cggtttgtagagcctcagcgtcttgtcattgaatggtgatctgtataacttctctagtga 9314
Query: 591 tgcgtcaaaacgctaaatggaattctttacatatttcactttcgtgtcagtagggtaaca 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9313 tgcgtcaaaacgctaaatggaattctttacatatttcactttcgtgtcagtagggtaaca 9254
Query: 651 ttgttgtgataattgtgtcacaggacataatacagatgatgcgactaagagataagttta 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9253 ttgttgtgataattgtgtcacaggacataatacagatgatgcgactaagagataagttta 9194
Query: 711 tacagtattntaatgatacgggttaacatcccaggcttangatttttagagatttatata 770
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9193 tacagtattttaatgatacgggttaacatcccaggcttaggatttttagagatttatata 9134
Query: 771 ataaaggtttggaactagatgagttgttttgtat-agggtattgatgttgctta-tatag 828
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 9133 ataaaggtttggaactagatgagttgttttgtataagggtattgatgttgcttattatag 9074
Query: 829 cgg-aaagctagcgtcac-acgaatt-gtcagtgacgttgtgttttcc-aatca-ntcca 883
||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 9073 cggaaaagctagcgtcacaacgaattagtcagtgacgttgtgttttccaaatcagttcca 9014
Query: 884 gttatacgttcancc-aaagtag-tgttagggatctgaaaggt 924
|||||||||||| || ||||||| ||| |||||||||| ||||
Sbjct: 9013 gttatacgttcagccaaaagtagttgtaagggatctgagaggt 8971
>3x_Contig1655
Length = 16228
Score = 349 bits (176), Expect = 6e-96
Identities = 182/184 (98%)
Strand = Plus / Minus
Query: 44 gcttcttcctttcacgttccaatttttcttcttctttccttttcgacttagcttgcttct 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 197 gcttcttcctttcacgttccaatctttcttcttctttccttttcgacttagcttgcttct 138
Query: 104 ctttttgtctcctaagttctcgctctgctttcttgtttgccatcgtggatgcagagtcat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ctttttgtctcctaagttctcgctctgctttcttgtttgccatcgtggatgcagagtcat 78
Query: 164 tgtcttctgcaccgcctgtcttctctgtttcttgttgactatctgctgcatctattgtag 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 77 tgtcttctgcaccgcctgtcttctctgtttcttgttgactatctgctgcatctaatgtag 18
Query: 224 cagt 227
||||
Sbjct: 17 cagt 14
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7490
Number of Sequences: 1807
Number of extensions: 7490
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)