BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB04FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1578 0.0
>3x_Contig1640
Length = 15521
Score = 1578 bits (796), Expect = 0.0
Identities = 848/858 (98%), Gaps = 6/858 (0%)
Strand = Plus / Plus
Query: 86 cggcatacttatgacattatctaccagagaccggacaacataataggcatacaatctgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13399 cggcatacttatgacattatctaccagagaccggacaacataataggcatacaatctgat 13458
Query: 146 gaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattcttatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13459 gaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattcttatc 13518
Query: 206 tggcgtctaattgatgtagtggtttccccttgtctctgattcgtgactcaagatagggca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13519 tggcgtctaattgatgtagtggtttccccttgtctctgattcgtgactcaagatagggca 13578
Query: 266 gacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtattattcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13579 gacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtattattcaa 13638
Query: 326 tagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcattttacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13639 tagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcattttacg 13698
Query: 386 tagtttttctggcgtttttttgttgtgaatttgacctttttatttacttgtcttgtgttt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13699 tagtttttctggcgtttttttgttgtgaatttgacctttttatttacttgtcttgtgttt 13758
Query: 446 ttttctcaacgttcctctgccacagagaagcaggttggaatttcaacctttcaaatattt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13759 ttttctcaacgttcctctgccacagagaagcaggttggaatttcaacctttcaaatattt 13818
Query: 506 agaccagtttgaaacattcttccggggtttctctatggcttctatttcattcatttatct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13819 agaccagtttgaaacattcttccggggtttctctatggcttctatttcattcatttatct 13878
Query: 566 gttatcctcaagtatatataaatatgggatgtacatgccatgggcaatttaagacgaaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13879 gttatcctcaagtatatataaatatgggatgtacatgccatgggcaatttaagacgaaat 13938
Query: 626 catctaaccggtaaacgactggtgtttttttttttggttgatggtttccttaaattatac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13939 catctaaccggtaaacgactggtgtttttttttttggttgatggtttccttaaattatac 13998
Query: 686 aaatccagagataatcatatctaattaaccgctgtctgctctgctttcactgctttcgca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13999 aaatccagagataatcatatctaattaaccgctgtctgctctgctttcactgctttcgca 14058
Query: 746 tcaccgttttcttctttttacctttntt-agaaataaagatcttactggtactgctacgc 804
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 14059 tcaccgttttcttctttttaccttttttaagaaataaagatcttactggtactgctacgc 14118
Query: 805 taggtcatccacttgtgattt-ataacattgacatta-aaaacttcnttattttct-ata 861
||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |||
Sbjct: 14119 taggtcatccacttgtgatttaataacattgacattagaaaacttctttattttctaata 14178
Query: 862 tttactggcacatattaccgctattatta-tatttgagagaaaag-tacttttttttttt 919
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct: 14179 tttactggcacatattaccgctattattattatttgagagaaaagttactttttttcttt 14238
Query: 920 taaccggaccttttaaaa 937
|||||||||||||||||
Sbjct: 14239 aaaccggaccttttaaaa 14256
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,319
Number of Sequences: 1807
Number of extensions: 18319
Number of successful extensions: 100
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)