BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB05FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1716 1602 0.0
3x_Contig1325 165 2e-40
3x_Contig1023 165 2e-40
3x_Contig695 165 2e-40
3x_Contig1384 153 8e-37
3x_Contig1787 145 2e-34
3x_Contig1329 145 2e-34
>3x_Contig1716
Length = 19108
Score = 1602 bits (808), Expect = 0.0
Identities = 834/839 (99%), Gaps = 3/839 (0%)
Strand = Plus / Plus
Query: 87 tatagtttctagctttctgtattaacaatgcacacgcattcgttgaaatagaagtccaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tatagtttctagctttctgtattaacaatgcacacgcattcgttgaaatagaagtccaaa 975
Query: 147 gtactatcattgactaagtatgaagacgaagtgagcattaggttaccgacgaccctccca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 gtactatcattgactaagtatgaagacgaagtgagcattaggttaccgacgaccctccca 1035
Query: 207 ctagcggatgtgctgcaagaatgtaatgaggattcaaagccatggaactgttattcacag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ctagcggatgtgctgcaagaatgtaatgaggattcaaagccatggaactgttattcacag 1095
Query: 267 ttaagaaaacgtgacatttctttttgagacaatctgcacggtccctagacagtagaccgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 ttaagaaaacgtgacatttctttttgagacaatctgcacggtccctagacagtagaccgc 1155
Query: 327 acttgattagtttaaaaaactataaaaagaaaatggacgagtccggagtcgaaccgaaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 acttgattagtttaaaaaactataaaaagaaaatggacgagtccggagtcgaaccgaaga 1215
Query: 387 cctctcccatgctaagggagcgcgctaccaactacgccacacgcccaatgtattttctga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1216 cctctcccatgctaagggagcgcgctaccaactacgccacacgcccaatgtattttctga 1275
Query: 447 aaggaagctactggcatttgtactatattgtgctgacagtggcatgacttttcttgctct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 aaggaagctactggcatttgtactatattgtgctgacagtggcatgacttttcttgctct 1335
Query: 507 atattgcaaatgatgccaacaaaaaaaagtaataaattaatcatttatggtaatcgaatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 atattgcaaatgatgccaacaaaaaaaagtaataaattaatcatttatggtaatcgaatg 1395
Query: 567 cttttgaaggtccaaagttattgaatagttgaaaatgtaaccaccaagaaagaaattgta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 cttttgaaggtccaaagttattgaatagttgaaaatgtaaccaccaagaaagaaattgta 1455
Query: 627 tcatgaaaggttaacctcaagccggctatgaacaactaaaacttatccatcaacggacat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1456 tcatgaaaggttaacctcaagccggctatgaacaactaaaacttatccatcaacggacat 1515
Query: 687 ctatttcttcgtaaattatttaaattatgctattctacacatcctctaaaacggagtgac 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 ctatttcttcgtaaattatttaaattatgctattctacacatcctctaaaacggagtgac 1575
Query: 747 cagaaggtgtttgcgtcaacgatttttgccatcttcttacctcttcgtcttcaacttctt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 cagaaggtgtttgcgtcaacgatttttgccatcttcttacctcttcgtcttcaacttctt 1635
Query: 807 ccaatactactgagttaacacttgagggcggag-ttcttctggggtggagaaactncatt 865
||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||
Sbjct: 1636 ccaatactactgagttaacacttga-ggcggagtttcttct-gggtggagaaactccatt 1693
Query: 866 gtcgtagttgttactggagttgacattattctctgacttttcaaaatcactagagtcaa 924
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1694 gtcgtagttgttactggagttgacattattctctgacttttcagaatcactagagtcaa 1752
>3x_Contig1325
Length = 7053
Score = 165 bits (83), Expect = 2e-40
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 350 aaaaagaaaatggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048 aaaaagaaaatggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgc 5989
Query: 410 gctaccaactacgccacacgccc 432
|||||||||||||||||||||||
Sbjct: 5988 gctaccaactacgccacacgccc 5966
>3x_Contig1023
Length = 4339
Score = 165 bits (83), Expect = 2e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 350 aaaaagaaaatggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2656 aaaaagaaaatggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgc 2715
Query: 410 gctaccaactacgccacacgccc 432
|||||||||||||||||||||||
Sbjct: 2716 gctaccaactacgccacacgccc 2738
>3x_Contig695
Length = 2059
Score = 165 bits (83), Expect = 2e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 350 aaaaagaaaatggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aaaaagaaaatggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgc 910
Query: 410 gctaccaactacgccacacgccc 432
|||||||||||||||||||||||
Sbjct: 911 gctaccaactacgccacacgccc 933
>3x_Contig1384
Length = 9372
Score = 153 bits (77), Expect = 8e-37
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 359 atggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgcgctaccaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgcgctaccaac 279
Query: 419 tacgccacacgcccaat 435
|||||||||||||||||
Sbjct: 278 tacgccacacgcccaat 262
>3x_Contig1787
Length = 34189
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 360 tggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgcgctaccaact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7039 tggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgcgctaccaact 6980
Query: 420 acgccacacgccc 432
|||||||||||||
Sbjct: 6979 acgccacacgccc 6967
>3x_Contig1329
Length = 7405
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 360 tggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgcgctaccaact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 tggacgagtccggagtcgaaccgaagacctctcccatgctaagggagcgcgctaccaact 1668
Query: 420 acgccacacgccc 432
|||||||||||||
Sbjct: 1669 acgccacacgccc 1681
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6806
Number of Sequences: 1807
Number of extensions: 6806
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 7
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)