BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB05RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig942 1144 0.0
3x_Contig508 387 e-107
>3x_Contig942
Length = 3614
Score = 1144 bits (577), Expect = 0.0
Identities = 642/656 (97%), Gaps = 6/656 (0%)
Strand = Plus / Plus
Query: 286 ccaataggtccaagttaccaatagcttctattgtatcttctctcttctcaccaggaggat 345
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 4 ccaataggtccaagttaccaataggttatattgtatcttctctcttctcaccaggaggat 63
Query: 346 gtgtaattgatgatacaacgaaagtattgcttgca-gtgtaataaataccctccaccaat 404
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 64 gtgtaattgatgatacaacgaaagtattgcttgcaagtgtaataaataccctcgacgaat 123
Query: 405 acaatacatccaggaacataataagttcccttcgttggtatagcttgctgaaggtgcaat 464
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 acaatacatccaggaaaataataagttcccttcgttggtatagcttgctgaaggtgcaat 183
Query: 465 tcaa-tgctaccgctggggtcttctaaactccaattccccttggaattctgatccagtag 523
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcaaatgctagcgctggggtcttctaaactccaattccccttggaattctgatccagtag 243
Query: 524 tccaagcaatagaaagttcttaccatcatgccctagtaagttttttatttgcgttatctt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tccaagcaatagaaagttcttaccatcatgccctagtaagttttttatttgcgttatctt 303
Query: 584 catatatgatgctgaattaagtggagacacatcagattcattcatatgctttcccatctc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catatatgatgctgaattaagtggagacacatcagattcattcatatgctttcccatctc 363
Query: 644 tataatagaagataaaggattgaatatgtcattattctgaaatttttcgtttctaagtac 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tataatagaagataaaggattgaatatgtcattattctgaaatttttcgtttctaagtac 423
Query: 704 cttgtcttttataatgtgatatcgtgtcgtaaatagggaaactttggactcaacattagg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttgtcttttataatgtgatatcgtgtcgtaaatagggaaactttggactcaacattagg 483
Query: 764 aagtttaagttttgcgatcgaaagcatgtttttttcaaccctcttta-gtcgaggtacgt 822
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 484 aagtttaagttttgcgatcgaaagcatgtttttttcaa-cctctttaggtcgaggtacgt 542
Query: 823 atatgtactgtcttttcgtatggtcatacgtganaatttgttga-taaacgcgtctatca 881
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 543 atatgtactgtcttttcgtatggtcatacgtgaaagtttgttgattaaacgcgtctatca 602
Query: 882 ctttaaaat-atctaaccaatccaactgttgatccacgttagaaattccattagct 936
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctttaaaataatctaaccaatccaactgttgatccacgttagaaattccattagct 658
>3x_Contig508
Length = 2437
Score = 387 bits (195), Expect = e-107
Identities = 201/203 (99%)
Strand = Plus / Plus
Query: 53 aaccgggacggattcaaaagaaccattaaacacgatcgctactggaggatccgttgttaa 112
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2235 aaccgggacggatacaaaagaaccattaaacacgatcgctactggaggatccgttgttaa 2294
Query: 113 cttgtcaaatgttttctttagtccatccattgtagtcatttcatccaaatatatgtcccc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2295 cttgtcaaatgttttctttagtccatccattgtagtcatttcatccaaatatatgtcccc 2354
Query: 173 tccgagaatgacaaatttgttatcgctgagctcttgttcaaggtattgcaatcgtatttt 232
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2355 tccgagaatgacaaatttgttatcgctgagctcttgttcaaggtaatgcaatcgtatttt 2414
Query: 233 taaatctttatctaaccttgcca 255
|||||||||||||||||||||||
Sbjct: 2415 taaatctttatctaaccttgcca 2437
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6726
Number of Sequences: 1807
Number of extensions: 6726
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)