BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB06FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1616 0.0
>3x_Contig1617
Length = 15119
Score = 1616 bits (815), Expect = 0.0
Identities = 854/864 (98%), Gaps = 3/864 (0%)
Strand = Plus / Plus
Query: 89 gtctagatctgctagagtcacttggttttatgataggaatttccttagttttaattgatt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 gtctagatctgctagagtcacttggttttatgataggaatttccttagttttaattgatt 93
Query: 149 caaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttagaatctg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 caaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttagaatctg 153
Query: 209 agaactcttctctttgggtcttgttctctaaattagatggtttcttttgtcccttctttt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 agaactcttctctttgggtcttgttctctaaattagatggtttcttttgtcccttctttt 213
Query: 269 cagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttatcgtcgc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 cagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttatcgtcgc 273
Query: 329 tatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgttgtatt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgttgtatt 333
Query: 389 ctgcatccctctttagcttggattcttgctttaatttagcaatctcagattgaggatcaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctgcatccctctttagcttggattcttgctttaatttagcaatctcagattgaggatcaa 393
Query: 449 tctttttgtcgtaattaggccccgaaacaactagacggggatcttctttactgttttctt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tctttttgtcgtaattaggccccgaaacaactagacggggatcttctttactgttttctt 453
Query: 509 cagcaatcactttttgtagatcaactttaccaattggtttccaggaagaagaatttggtt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cagcaatcactttttgtagatcaactttaccaattggtttccaggaagaagaatttggtt 513
Query: 569 ctagtggtttcttgtcgaaatcacgttcttccaactctggttcaccccattcatcgtcct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctagtggtttcttgtcgaaatcacgttcttccaactctggttcaccccattcatcgtcct 573
Query: 629 tcttacctctgctcttctcagtctttgggggagaaacggatcttcttgatgggaacgatg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tcttacctctgctcttctcagtctttgggggagaaacggatcttcttgatgggaacgatg 633
Query: 689 gtgtaggttccttttgctcagattgtctggatgaaacactgactggtttcttggctgtct 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gtgtaggttccttttgctcagattgtctggatgaaacactgactggtttcttggctgtct 693
Query: 749 tggcagcagaggaaattggcttcttggaggccggtgtttgttgttgaattgaataacggg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tggcagcagaggaaattggcttcttggaggccggtgtttgttgttgaattgaataacggg 753
Query: 809 caccagcgnagttgctgattttcattaacatttcagattcatctaagtcatcctcatctc 868
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 754 caccagcggagttgctgattttcattaacaattcagattcatctaagtcatcctcatctc 813
Query: 869 tggcggtnacctgnacatgggtagtctt-aacacttgattagagatcacaccgaaa-tct 926
||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct: 814 tggcggtaacctgaacatggtaggtcttaaacacttgattagagatcacaccgaaattct 873
Query: 927 gagc-aatgaagctctggttttca 949
|||| |||||||||||||||||||
Sbjct: 874 gagcaaatgaagctctggttttca 897
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8545
Number of Sequences: 1807
Number of extensions: 8545
Number of successful extensions: 156
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)