BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB06RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1364 1425 0.0
3x_Contig861 299 5e-81
>3x_Contig1364
Length = 7464
Score = 1425 bits (719), Expect = 0.0
Identities = 725/727 (99%)
Strand = Plus / Plus
Query: 49 tcaaaatcctgtttggagccatgattcgctttttcaaataacatatccatcataagcttg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6730 tcaaaatcctgtttggagccatgattcgctttttcaaataacatatccatcataagcttg 6789
Query: 109 gacttattaagttcttccatttcctcatcttctgatcttggtttataattgacccctgct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6790 gacttattaagttcttccatttcctcatcttctgatcttggtttataattgacccctgct 6849
Query: 169 ctcatcaactccttatcgttaccatgttcacgaaacctttgcgtcgttgttttgaaatat 228
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 6850 ctcatcaactccttatcgttaccatgttcacgaaacctttgcgtcgttgtctcgaaatat 6909
Query: 229 tgcctagctttccttctgaacccaaataactctcgatttaacgaagaagtcttgctcgca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6910 tgcctagctttccttctgaacccaaataactctcgatttaacgaagaagtcttgctcgca 6969
Query: 289 gtcgaatttgtttgaaaagtacctaaattagaggccttcttttgtccatataacgttgct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6970 gtcgaatttgtttgaaaagtacctaaattagaggccttcttttgtccatataacgttgct 7029
Query: 349 tcaatttgagggtccaagaaactaccttctgatatcatttaagctattgtattatccctt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7030 tcaatttgagggtccaagaaactaccttctgatatcatttaagctattgtattatccctt 7089
Query: 409 tacaatgaaattgttgaaaaaaatgagtgactatggttgagtagcaattgtttgtttgat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7090 tacaatgaaattgttgaaaaaaatgagtgactatggttgagtagcaattgtttgtttgat 7149
Query: 469 ttattggctatttggtaaaagttgtgtgtattaagttacaaatccgtttatatataatgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7150 ttattggctatttggtaaaagttgtgtgtattaagttacaaatccgtttatatataatgt 7209
Query: 529 tcggttggtacagatatgacaactgttctcacaatttaacctgcttttatagtccgattc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7210 tcggttggtacagatatgacaactgttctcacaatttaacctgcttttatagtccgattc 7269
Query: 589 tttaggtttgtgacactgacctcacggtgtcagtttttgcacatagtgatatatcaagaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7270 tttaggtttgtgacactgacctcacggtgtcagtttttgcacatagtgatatatcaagaa 7329
Query: 649 aaagatttgtattgcgaaaggaatactgacatgaaagtcagactatgaaaacgatgtgcg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7330 aaagatttgtattgcgaaaggaatactgacatgaaagtcagactatgaaaacgatgtgcg 7389
Query: 709 accctctttcaataaagattttacagtccctaagaatcagtagaagaggaaggaagttat 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7390 accctctttcaataaagattttacagtccctaagaatcagtagaagaggaaggaagttat 7449
Query: 769 ctcttgg 775
|||||||
Sbjct: 7450 ctcttgg 7456
>3x_Contig861
Length = 2397
Score = 299 bits (151), Expect = 5e-81
Identities = 199/213 (93%), Gaps = 2/213 (0%)
Strand = Plus / Minus
Query: 759 aggaagttatctcttggatgccaaagaagagtttctgaaaagaatgctaatttacagtat 818
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2397 aggaagttatctcttggatgccaaagaagagtttctgaaa-gaatgctaatttacagtat 2339
Query: 819 acaacaataattgagatgcttatttgtcggggatcagacactaacattacacatgtcacc 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2338 acaacaataattgagatgcttatttgtcggggatcagacactaacattacacatgtcacc 2279
Query: 879 acggcgtgaagtctncaccttcataattncacgt-ataccatggtagcattagcagacac 937
|||||||||||||| ||||||||| | | ||||| ||||||||||||||| ||||||||
Sbjct: 2278 acggcgtgaagtctccaccttcattaattcacgtaataccatggtagcataggcagacac 2219
Query: 938 ttcaagttttgatttggatataactgccttttt 970
| ||||||| ||||| ||||||||||||||
Sbjct: 2218 tccaagtttgaatttgataataactgccttttt 2186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8027
Number of Sequences: 1807
Number of extensions: 8027
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 2
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)