BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB07FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1459 0.0
>3x_Contig1784
Length = 28126
Score = 1459 bits (736), Expect = 0.0
Identities = 844/874 (96%), Gaps = 5/874 (0%)
Strand = Plus / Minus
Query: 89 ggcacaaagtgtgtctaaacaagtacagagcccttggatggcagcaaacccagtgatact 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5636 ggcacaaagtgtgtctaaacaagtacagagcccttggatggcagcaaacccagtgatact 5577
Query: 149 cgctgtcatagatcctagggtaacagctcctaattcattgcttcccaaatgtgaaacgga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5576 cgctgtcatagatcctagggtaacagctcctaattcattgcttcccaaatgtgaaacgga 5517
Query: 209 aaaaattgatgctaaagataaagagttttgtaaaatgaaagtcagtacaagaggtgatgc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5516 aaaaattgatgctaaagataaagagttttgtaaaatgaaagtcagtacaagaggtgatgc 5457
Query: 269 attagatgttatcactatggcctctctcttaaatgtggtatttatgtctttccctgattc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5456 attagatgttatcactatggcctctctcttaaatgtggtatttatgtctttccctgattc 5397
Query: 329 aattgcatcctcccaagtttcaatcacttcttgatcctcgattgatgatgttggtgcaaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5396 aattgcatcctcccaagtttcaatcacttcttgatcctcgattgatgatgttggtgcaaa 5337
Query: 389 ggaagagtttggatcatttgttgaatatgcagcatgattatgaagagcatgattagaatt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5336 ggaagagtttggatcatttgttgaatatgcagcatgattatgaagagcatgattagaatt 5277
Query: 449 gtacagcttattgtccatcaatagatcccgttcttctcgtattagatttttcggtaaggc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5276 gtacagcttattgtccatcaatagatcccgttcttctcgtattagatttttcggtaaggc 5217
Query: 509 ggaatgaatctcactactatcactgcttcccgttcggcctgtagaaccatattcgtgttg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5216 ggaatgaatctcactactatcactgcttcccgttcggcctgtagaaccatattcgtgttg 5157
Query: 569 taaagtacgagaattattggttgcgaaaagagaatcctctgaatcttcgctaatatcgtc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5156 taaagtacgagaattattggttgcgaaaagagaatcctctgaatcttcgctaatatcgtc 5097
Query: 629 gtctataaatgcttgagtcttgtctcccgaaatataatcttgaggagagaaaagaccgnc 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5096 gtctataaatgcttgagtcttgtctcccgaaatataatcttgaggagagaaaagaccgcc 5037
Query: 689 tttaccattattgttcgagtaaattattggaagatcttctctcctgggttgnatgcttga 748
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 5036 tttaccattattgttcgagtaaatta-tggaagatcttctctcctgggttgtatgcttga 4978
Query: 749 aatgcttaaacatttgattttgggtattaaaaaactagag-aaaagggggaaaactcttc 807
| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4977 attgcttagacatttgattttgggtattaaaaaactagagaaaaagggggaaaactcttc 4918
Query: 808 ctaaagttgtactggtcttctatttcgatgaaagccaattaagttatgagattttaacga 867
|| |||||||||||| |||||| ||||| |||||||||||||||||||||||| |||
Sbjct: 4917 tcaaggttgtactggtc-tctattcggatgagagccaattaagttatgagattttagcga 4859
Query: 868 ttatatataaggccaaagtagtttctttccctttgataaaccagaagttcaatttaaggt 927
|||| |||| |||||||||||| ||| || ||||||||||| ||||||| |||||||
Sbjct: 4858 ttattagtaagtccaaagtagtttacttcactatgataaaccag-agttcaaattaaggt 4800
Query: 928 ggttctcaaaattgggaagatttccttcaaaaaa 961
||||| | ||| | |||||| || ||||||||||
Sbjct: 4799 ggttc-ctaaagttggaagagtttcttcaaaaaa 4767
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7107
Number of Sequences: 1807
Number of extensions: 7107
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)