BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB07RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1667 0.0
3x_Contig25 327 2e-89
>3x_Contig1729
Length = 15481
Score = 1667 bits (841), Expect = 0.0
Identities = 898/909 (98%), Gaps = 6/909 (0%)
Strand = Plus / Plus
Query: 45 gctttcttcatgtaatgaaatctacttcaaaatacgcctagttcttaatcaatatcggag 104
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4843 gctttcttcatgtaatgaaatcaacttcaaaatacgcctagttcttaatcaatatcggag 4902
Query: 105 aggttttcgtatttgagtgtgtcgttatcatactccaatctgctgtgaatcagtaagctc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4903 aggttttcgtatttgagtgtgtcgttatcatactccaatctgctgtgaatcagtaagctc 4962
Query: 165 tccaatgttgcataaataggacaccatattttgatgtataaatactcattgacgctcata 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 4963 tccaatgttgcataaataggacaccatattttgatgtataaatactcattgacgcgcaga 5022
Query: 225 actctaggtatcaatgtgaagtccacaatagaaccgatgcaggcggtcagttcttccctc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5023 actctaggtatcaatgtgaagtccacaatagaaccgatgcaggcggtcagttcttccctc 5082
Query: 285 ttataactataatttggattcccgaagaaaagtgtcaagttctgtctcccccagatttgc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5083 ttataactataatttggattcccgaagaaaagtgtcaagttctgtctcccccagatttgc 5142
Query: 345 accttaagaagttcttcgaaagggttttcaattgtacattgagtaccgaccatgccacta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5143 accttaagaagttcttcgaaagggttttcaattgtacattgagtaccgaccatgccacta 5202
Query: 405 cgagtaaggtatatagtcacattgttaccattgtcgaaaatacttaaaattttagcagta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 cgagtaaggtatatagtcacattgttaccattgtcgaaaatacttaaaattttagcagta 5262
Query: 465 actttgatgtctttgtgatccatttgcacgttattcttaatatcaataatgtcaacagtt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 actttgatgtctttgtgatccatttgcacgttattcttaatatcaataatgtcaacagtt 5322
Query: 525 ttaggatttcgggtaccaaatagctcaatgggacgagtagcagcgtcttcttctattttg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 ttaggatttcgggtaccaaatagctcaatgggacgagtagcagcgtcttcttctattttg 5382
Query: 585 tcaacaccttccctcttcaattggttctcaagcttggcaattgaatcgtcttttgggtct 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 tcaacaccttccctcttcaattggttctcaagcttggcaattgaatcgtcttttgggtct 5442
Query: 645 tctgaggaaccggcagagtcatagaaagcttgttcctgtagcagttgcggattctcagac 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5443 tctgaggaaccggcagagtcatagaaagcttgttcctgtagcagttgcggattctcagac 5502
Query: 705 attctattcttggatattggcaagaagcgactcatggttaacgtgtacagttgtatgacc 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5503 attctattcttggatattggcaagaagcgactcatggttaacgtgtacagttgtatgacc 5562
Query: 765 tctgatggcatccgtttaaatattttatttcttaga-gcttcaat-acttgtattcctca 822
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 5563 tctgatggcatccgtttaaatattttatttcttagaggcttcaataacttgtattcctca 5622
Query: 823 gt-gtaactggcgtggtaggagtaatgggatcggcgtcaagtataacagtgttttagctt 881
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5623 gtggtaactggcgtggtaggagtaatgggatcggcgtcaagtataacagtg-tttagctt 5681
Query: 882 accttgtaataattgacatttaacagtgaattttgaatatgatacttcggaggggtaata 941
|||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 5682 accttgaaataattgacatttaacagtgaa-tttgaatatgatacttc-gatgggtaata 5739
Query: 942 ttactgttg 950
|||||||||
Sbjct: 5740 ttactgttg 5748
>3x_Contig25
Length = 1081
Score = 327 bits (165), Expect = 2e-89
Identities = 443/533 (83%), Gaps = 2/533 (0%)
Strand = Plus / Plus
Query: 200 gtataaatactcattgacgctcataactctaggtatcaatgtgaagtccacaatagaacc 259
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtataaatactcattgacgcgcg-aactctaggtatcaatgtgaagtccacaatagaacc 67
Query: 260 gatgcaggcggtcagttcttccctcttataactataatttggattcccgaagaaaagtgt 319
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 68 gatgcaggcggtcagttcttccctcttataactataatttggattcgcgaagaaaagtgt 127
Query: 320 caagttctgtctcccccagatttgcaccttaagaagttcttcgaaagggttttcaattgt 379
||||| ||| | ||||||| | |||||||||| || ||||||||||| ||||||
Sbjct: 128 gaagttgtgtgtgggggagatttggaggttaagaagttgttggaaagggttttgaattgt 187
Query: 380 acattgagtaccgaccatgccactacgagtaaggtatatagtcacattgttaccattgtc 439
|||||||||| || ||| | || |||||||||||||||| | ||||||| |||||
Sbjct: 188 acattgagtagggaggatgggagtaggagtaaggtatatagtgagattgttaggattgtg 247
Query: 440 gaaaatacttaaaattttagcagtaactttgatgtctttgtgatccatttgcacgttatt 499
||||||| |||| ||||||| ||||| |||||||| |||||||| ||||| | ||||||
Sbjct: 248 gaaaatagttaagattttaggagtaagtttgatgtgtttgtgatggatttggaggttatt 307
Query: 500 cttaatatcaataatgtcaacagttttaggatttcgggtaccaaatagctcaatgggacg 559
||||||| |||||||| || ||||||||||||| | ||| |||||| | ||||||| |
Sbjct: 308 gttaatatgaataatgtgaagagttttaggatttggtgtaggaaataggtgaatgggagg 367
Query: 560 agtagcagcgtcttcttctattttgtcaacaccttccctcttcaattggttctcaagctt 619
|||| || || || || |||||||| || | || | || |||| ||| | ||| ||
Sbjct: 368 agtatgagggtgttgttgtattttgtgaagaggttgggtgttgaattcgttgtgaaggtt 427
Query: 620 ggcaattgaatcgtcttttgggtcttctgaggaaccggcagagtcatagaaagcttgttc 679
|| |||||||| || |||||||| || ||||||| || ||||| |||||||| |||||
Sbjct: 428 gggaattgaatggtgttttgggtgttgtgaggaagggggagagtgatagaaaggttgttg 487
Query: 680 ctgtagcagttgcggattct-cagacattctattcttggatattggcaagaag 731
||||| ||||| ||||| | |||| ||| |||| ||||||||||| ||||||
Sbjct: 488 gtgtaggagttggggattgtgcagagattgtattgttggatattgggaagaag 540
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6538
Number of Sequences: 1807
Number of extensions: 6538
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)