BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB08FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig967 1546 0.0
>3x_Contig967
Length = 3110
Score = 1546 bits (780), Expect = 0.0
Identities = 829/840 (98%), Gaps = 4/840 (0%)
Strand = Plus / Minus
Query: 86 ctgaaatctttcgcaggtcgaaaagatttgtcctgtcaagtatgttattctcctttctag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2714 ctgaaatctttcgcaggtcgaaaagatttgtcctgtcaagtatgttattctcctttctag 2655
Query: 146 gagatctttcatattttattagaggtgatgggtttggcgatttctcaggtataggactaa 205
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2654 gagatctttcatattttggtagaggtgatgggtttggcgatttctcaggtataggactaa 2595
Query: 206 acccgctaccctttatgtcgcttgaaaatgaactttggctcctcaaatgcattatatcat 265
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2594 acccgctacccaataggtcgcttgaaaatgaactttggctcctcaaatgcattatatcat 2535
Query: 266 cgtgtgaatggattctggcaagtctatttcttttctttttgagggattggctcctactca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2534 cgtgtgaatggattctggcaagtctatttcttttctttttgagggattggctcctactca 2475
Query: 326 gagaggaatgttttgttatgtcataatcttcaacgtcttctgcttcctcaagcgaaagtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2474 gagaggaatgttttgttatgtcataatcttcaacgtcttctgcttcctcaagcgaaagtc 2415
Query: 386 tcggtgttctatccgcagacgtttgtgacgataaaatacttccttgctgggaatttggat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2414 tcggtgttctatccgcagacgtttgtgacgataaaatacttccttgctgggaatttggat 2355
Query: 446 gtatacgaacgatttcagtatccggcgtgtcttggttagtatcggacatagatgacattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2354 gtatacgaacgatttcagtatccggcgtgtcttggttagtatcggacatagatgacattg 2295
Query: 506 aagtcctattcaaaagaataacagattctgaagtatcatcattatcaccccattcatgct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2294 aagtcctattcaaaagaataacagattctgaagtatcatcattatcaccccattcatgct 2235
Query: 566 ttcgggtacccttgatggctggtatgttattggtgttggaaagtaaaggagcgaatgttt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2234 ttcgggtacccttgatggctggtatgttattggtgttggaaagtaaaggagcgaatgttt 2175
Query: 626 ctgcatcagaccggcttagcagtggtgacgtattcgatgaactggtctttccattggagc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2174 ctgcatcagaccggcttagcagtggtgacgtattcgatgaactggtctttccattggagc 2115
Query: 686 ttttcttaaacaacttagaactgaaaattttgttactagtaagtttatgaagcggctcga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2114 ttttcttaaacaacttagaactgaaaattttgttactagtaagtttatgaagcggctcga 2055
Query: 746 aacttgaagattgctttaaaacattgttaggtgggtaccctgatggataagatagctcag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2054 aacttgaagattgctttaaaacattgttaggtgggtaccctgatggataagatagctcag 1995
Query: 806 tcccaaaaggaccttgtgagttttctcctgttttcgggactttcgtt-gaagattttctg 864
||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 1994 tcccaaaagaaccttgtgag-tttctcctgttttcgggactttcgttggaagattttctg 1936
Query: 865 gggct-ttatctaaagatgaagctcttttatgagtttttataaaa-acctcatggttgtt 922
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1935 gggctattatctaaagatgaagctcttttatgagtttttataaaagacctcattgttgtt 1876
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6453
Number of Sequences: 1807
Number of extensions: 6453
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)