BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB08RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1334 0.0
>3x_Contig1416
Length = 10161
Score = 1334 bits (673), Expect = 0.0
Identities = 704/711 (99%), Gaps = 3/711 (0%)
Strand = Plus / Plus
Query: 220 gtgagttgctctagataagccttcaataatttccaagacttgttaaagtgagacccattt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2086 gtgagttgctctagataagccttcaataatttccaagacttgttaaagtgagacccattt 2145
Query: 280 aactgcatgaaaagagtgttcgctaagggagaaagatataagaccctagaatctatatca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 aactgcatgaaaagagtgttcgctaagggagaaagatataagaccctagaatctatatca 2205
Query: 340 cctgatctcttggatgctaatgagtattttgatttgaagtctttgattattttgtctgtg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 cctgatctcttggatgctaatgagtattttgatttgaagtctttgattattttgtctgtg 2265
Query: 400 tcgtaaaatatcttcacgaaactcaaaatgcttttgttaatgcttttatgatcccaggtc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 tcgtaaaatatcttcacgaaactcaaaatgcttttgttaatgcttttatgatcccaggtc 2325
Query: 460 cgtagttctgagcgatcgtcaatttctaggatgctggatttccataaactatgttgcata 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 cgtagttctgagcgatcgtcaatttctaggatgctggatttccataaactatgttgcata 2385
Query: 520 ttcaatagaggttgtttgttttcaactcttgcgactgatttgaacgtaattgtaatggtg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2386 ttcaatagaggttgtttgttttcaactcttgcgactgatttgaacgtaattgtaatggtg 2445
Query: 580 tcatcttccacctgaattgcagttattcttgaagcagctccaacagagttattcacggct 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2446 tcatcttccacctgaattgcagttattcttgaagcagctccaacagagttattcacggct 2505
Query: 640 tcaaagggtaaaagaactatgtacatctgaacttctgcgtcattattgctattatcagag 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2506 tcaaagggtaaaagaactatgtacatctgaacttctgcgtcattattgctattatcagag 2565
Query: 700 ccgtacttcttatggaactgtttgcatgaatt-acaactgaattatcgactactatttcg 758
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2566 ccgtacttcttatggaactgtttgcatgaattcacaactgaattatcgactactatttcg 2625
Query: 759 ttctgagcaatagccgtgttgattttgtccaatagatgattattcttgaatgaattattt 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2626 ttctgagcaatagccgtgttgattttgtccaatagatgattattcttgaatgaattattt 2685
Query: 819 cgtttgaactcagatagcacatgtattatagaatctctctcaaatgaaaccttgtacgat 878
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2686 cgtttgaactcagatagcacatgtataatagaatctctctcaaatgaaaccttgtacgat 2745
Query: 879 acaccaggtagtgggacaagcttnnagtgcgtcaac-agtgttaagcaagg 928
||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct: 2746 acaccaggtagtgggacaagcttag-gtgcgtcaacaagtgtaaagcaagg 2795
Score = 331 bits (167), Expect = 1e-90
Identities = 170/171 (99%)
Strand = Plus / Plus
Query: 42 gctttttgaaaatttgttggaattcttggacgcatgtggagaataaaattgcccttgatt 101
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1907 gctttttgaaaatttgttggaagtcttggacgcatgtggagaataaaattgcccttgatt 1966
Query: 102 tgagtttcttcgcagtgagaaagtctaagcgttgtttcaatgacataggtagtatactca 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1967 tgagtttcttcgcagtgagaaagtctaagcgttgtttcaatgacataggtagtatactca 2026
Query: 162 ttaccaagtccatcattgaaactaattcaaagcaggtgtcataattccttt 212
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2027 ttaccaagtccatcattgaaactaattcaaagcaggtgtcataattccttt 2077
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8587
Number of Sequences: 1807
Number of extensions: 8587
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)