BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB11FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1614 0.0
>3x_Contig1719
Length = 15804
Score = 1614 bits (814), Expect = 0.0
Identities = 836/841 (99%), Gaps = 2/841 (0%)
Strand = Plus / Plus
Query: 86 ccttacaaacattcacacaccattgtcattacttgatccaatttgatgacaagtgacaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14920 ccttacaaacattcacacaccattgtcattacttgatccaatttgatgacaagtgacaca 14979
Query: 146 aactttctcccgttatacagcacttcctgttaccttcactactgtagattctagtggtct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14980 aactttctcccgttatacagcacttcctgttaccttcactactgtagattctagtggtct 15039
Query: 206 ttctttttcaacagtgttttttccccttcctcaatttcgcttcaagaggaaaaaaagccc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15040 ttctttttcaacagtgttttttccccttcctcaatttcgcttcaagaggaaaaaaagccc 15099
Query: 266 gtcagttgagttggctgtttcaattgcaagtacagaaaacggtttgtactcagctagctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15100 gtcagttgagttggctgtttcaattgcaagtacagaaaacggtttgtactcagctagctt 15159
Query: 326 tcagtgtgtatattgttggaagtttgtagcttggatctaaagcgtcactgccgggatgat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15160 tcagtgtgtatattgttggaagtttgtagcttggatctaaagcgtcactgccgggatgat 15219
Query: 386 tgtccagttttctcttattccagttaatttcatttttgtgtttgaacttgatatataaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15220 tgtccagttttctcttattccagttaatttcatttttgtgtttgaacttgatatataaaa 15279
Query: 446 gacggacacaaaccgtcaaattgacagtttcgtggtgtctagttgtcgtagcttttctac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15280 gacggacacaaaccgtcaaattgacagtttcgtggtgtctagttgtcgtagcttttctac 15339
Query: 506 tactgttaatttggattgataaataattcagtaggaaatagccccactaaaaaattcaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15340 tactgttaatttggattgataaataattcagtaggaaatagccccactaaaaaattcaag 15399
Query: 566 actctctcggtacttgaggagagaaattacatcatacaagatttcattttccaagttgat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15400 actctctcggtacttgaggagagaaattacatcatacaagatttcattttccaagttgat 15459
Query: 626 aaattttattaggacaatgtcaatcaactcatcacaggatttagagaagggtgtcacgga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15460 aaattttattaggacaatgtcaatcaactcatcacaggatttagagaagggtgtcacgga 15519
Query: 686 cacccaaaatattgaggattctcatcaaccgtaccagcaccatattcacaatgtttccat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15520 cacccaaaatattgaggattctcatcaaccgtaccagcaccatattcacaatgtttccat 15579
Query: 746 cgatggggattacgtgcgtttgggtaatcaaacttataagagatcggagttgctaaacgc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15580 cgatggggattacgtgcgtttgggtaatcaaacttataagagatcggagttgctaaacgc 15639
Query: 806 tttcgccggtgactttaacccttgtatccattcacgtcctcctncagctttggctaaccc 865
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 15640 tttcgccggtgactttaaccctggtatccatccacgtcctcctccagctttggctaaccc 15699
Query: 866 agttcctttgggtcttgcatcattctcattcctgttgtttggtggctttctttgattaat 925
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 15700 agttcctttgggtcttgcatcattctcatt-ctgttgtttggt-gctttctttgattaat 15757
Query: 926 g 926
|
Sbjct: 15758 g 15758
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7149
Number of Sequences: 1807
Number of extensions: 7149
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)