BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZB11RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig589 1405 0.0
>3x_Contig589
Length = 2261
Score = 1405 bits (709), Expect = 0.0
Identities = 801/819 (97%), Gaps = 11/819 (1%)
Strand = Plus / Minus
Query: 104 tcatctgctggttcaccgtcatctgtgaagtcggcttcttcatcactatcttcaatgaat 163
|||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct: 2260 tcatctgctggt-caccgtcatctgt-aagtcggctc--tcatcactatcttca-tgaat 2206
Query: 164 tcttttgaaagtggtctggacttacctctcttagagtcaccattttgaactcctttcaat 223
||||| |||||||||||||||| |||||||||||| |||||||||||| |||| ||||||
Sbjct: 2205 tcttt-gaaagtggtctggact-acctctcttaga-tcaccattttga-ctccgttcaat 2150
Query: 224 tgatcatcatcctcatcatcttcatcaacgatttttttggcagttcttctctttttcttt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 tgatcatcatcctcatcatcttcatcaacgatttttttggcagttcttctctttttcttt 2090
Query: 284 gaagatttactatcagagtctgcttttctctttgctttcttccctttcttagatggtgct 343
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2089 gaagatttactatcagagtctgcttttctctttgctttcttccctgtcttagatggtgct 2030
Query: 344 ttataagacccgtcttcttcttgaggtaggtcatcgttgtcattgtcgtcatcaacaatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 ttataagacccgtcttcttcttgaggtaggtcatcgttgtcattgtcgtcatcaacaatc 1970
Query: 404 tcctcttgcgcggtacgttcttggatcaacctttgtgcttcttcttgcaattttctgtat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 tcctcttgcgcggtacgttcttggatcaacctttgtgcttcttcttgcaattttctgtat 1910
Query: 464 tcctccgccagtttttcacttttgatcttttcttcttccttctgttgggcgtccctttga 523
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 tcctccgccagtttttcactgttgatcttttcttcttccttctgttgggcgtccctttga 1850
Query: 524 gcttcaagctcacgttgttcttccaaaactttacgagcattttccattttggctgagatt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 gcttcaagctcacgttgttcttccaaaactttacgagcattttccattttggctgagatt 1790
Query: 584 tccaattcatacgccttttggtcttctatactgcgctctagtgctgttttcatggtggtc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 tccaattcatacgccttttggtcttctatactgcgctctagtgctgttttcatggtggtc 1730
Query: 644 tcacctagttgaatacgttgctctaattgttctgaaggaattactatggatttagtttcc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 tcacctagttgaatacgttgctctaattgttctgaaggaattactatggatttagtttcc 1670
Query: 704 agaagttcttttaataatgaaataccgtattgcaacccctcaatactggcttcaagatca 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 agaagttcttttaataatgaaataccgtattgcaacccctcaatactggcttcaagatca 1610
Query: 764 gccatggttctttctttaggactagatcttctcatttgctcggcaacttggaattccaat 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 gccatggttctttctttaggactagatcttctcatttgctcggcaacttggaattccaat 1550
Query: 824 -atgcaaggttgaacttatagctactggtcatcttacccgttactttcgcagattct-aa 881
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1549 aatgcaaggttgaacttatagctactggtcatcttaccgtttactttcgcagattctaaa 1490
Query: 882 tcatacgcacgtntgacataaccaagcgctttctgaaca 920
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 1489 tcatacgcacgtttgacataaccaagcgctttctgaaca 1451
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9587
Number of Sequences: 1807
Number of extensions: 9587
Number of successful extensions: 121
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)