BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZB12RM1.SCF screened BAC_end
         (980 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1212                                                        1681   0.0  

>3x_Contig1212 
          Length = 5727

 Score = 1681 bits (848), Expect = 0.0
 Identities = 890/901 (98%), Gaps = 3/901 (0%)
 Strand = Plus / Minus

                                                                        
Query: 78   cctttacatgcaacctttaagacactcttcctcataanccaggaatgagaaatatagtcg 137
            ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct: 5151 cctttacatgcaacctttaag-cactcttcctcataa-ccaggaatgagaa-tatagtcg 5095

                                                                        
Query: 138  attccatattgtgccaacttgtgatagctggtattattcttgacaaaaatgtccggttcc 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5094 attccatattgtgccaacttgtgatagctggtattattcttgacaaaaatgtccggttcc 5035

                                                                        
Query: 198  ataacacccacgaagacagtctttatagcgcctgttttttggattattcggtctacgcat 257
            |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 5034 ataacacccacgaagacagtctttatagcgccagttgtttggattattcggtctacgcat 4975

                                                                        
Query: 258  ggcaagttaccactgagccttagagaacaaggttccattgttgtgtaaatgatggttcca 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4974 ggcaagttaccactgagccttagagaacaaggttccattgttgtgtaaatgatggttcca 4915

                                                                        
Query: 318  tctggaagtttcgcaccttctgattttgtgaagtatttatctaatgcacattgctcagca 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4914 tctggaagtttcgcaccttctgattttgtgaagtatttatctaatgcacattgctcagca 4855

                                                                        
Query: 378  tgagtatttcctggtaattctctcgaataaccggtggaaagtatatcagttccgttgaca 437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4854 tgagtatttcctggtaattctctcgaataaccggtggaaagtatatcagttccgttgaca 4795

                                                                        
Query: 438  aggagtgcgcctacattaaaggcagtttgagtttcaccacaatttcttgcctcatctatc 497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4794 aggagtgcgcctacattaaaggcagtttgagtttcaccacaatttcttgcctcatctatc 4735

                                                                        
Query: 498  gccaactccataaattttctgtgcggctcaatcgcccagtcagggaagtccgttctgtaa 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4734 gccaactccataaattttctgtgcggctcaatcgcccagtcagggaagtccgttctgtaa 4675

                                                                        
Query: 558  ctccataatttttttccatcagaatcaagctcggtggattcgtaccgataagcatgaagc 617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4674 ctccataatttttttccatcagaatcaagctcggtggattcgtaccgataagcatgaagc 4615

                                                                        
Query: 618  cacaaatcaagatcatttggaccaggatctgaatatagctctgtgtcacaaatttcacat 677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4614 cacaaatcaagatcatttggaccaggatctgaatatagctctgtgtcacaaatttcacat 4555

                                                                        
Query: 678  tgctgaccgagtaagacttcaccaaatgaatcaggatgcatccaactctcggcggactca 737
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4554 tgctgaccgagtaagacttcaccaaatgaatcaggatgcatccaactctcggcggactca 4495

                                                                        
Query: 738  gtcttgccgacaagatctaagctccctantatatctgagaaatctccttcgtaatctttg 797
            ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 4494 gtcttgccgacaagatctaagctccctataatatctgagaaatctccttcgtaatctttg 4435

                                                                        
Query: 798  cccaaggatggtccccaaatgtgaggatttgagtatataggatcgttagcaatgggatgt 857
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 cccaaggatggtccccaaatgtgaggatttgagtatataggatcgttagcaatgggatgt 4375

                                                                        
Query: 858  cctagatgttgtagatgaactctattttgatgagttctaccagtgaatggcttgcaccta 917
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4374 cctagatgttgtagatgaactctaatttgatgagttctaccagtgaatggcttgcaccta 4315

                                                                        
Query: 918  acaatactagtcttgccatcgaaacttatnncttcaaagctagttcgagcttccttggca 977
            |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 4314 acaatactagtcttgccatcgaaacttatcctttcaaagctagttcgagcttccttggca 4255

             
Query: 978  c 978
            |
Sbjct: 4254 c 4254


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5425
Number of Sequences: 1807
Number of extensions: 5425
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)