BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC01FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1653 1639 0.0
>3x_Contig1653
Length = 14012
Score = 1639 bits (827), Expect = 0.0
Identities = 860/869 (98%), Gaps = 2/869 (0%)
Strand = Plus / Plus
Query: 86 tgatgtcattttgccaaaatgtctgttgtacattatatatttttaccttaatgtccagcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478 tgatgtcattttgccaaaatgtctgttgtacattatatatttttaccttaatgtccagcc 6537
Query: 146 atcagttcccttcgtatttcaatcacacaactctgacaggaattaaatcatctcttttca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6538 atcagttcccttcgtatttcaatcacacaactctgacaggaattaaatcatctcttttca 6597
Query: 206 gtcccaacgctaacagtattttcataagactcagcttggcttgcaaaattaacacgcgta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6598 gtcccaacgctaacagtattttcataagactcagcttggcttgcaaaattaacacgcgta 6657
Query: 266 ctataggatatttggaaatgtcgctatatcatagcctagtatttgctatcttagtcgtgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6658 ctataggatatttggaaatgtcgctatatcatagcctagtatttgctatcttagtcgtgg 6717
Query: 326 aattgattacattgactttgttaggtcttccacttccctcgaagtttaagaaacctgtca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6718 aattgattacattgactttgttaggtcttccacttccctcgaagtttaagaaacctgtca 6777
Query: 386 tctctgccctttcgaaacctttcttttctcctacggttcagataacaatcaaatgcttac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6778 tctctgccctttcgaaacctttcttttctcctacggttcagataacaatcaaatgcttac 6837
Query: 446 tagcattcattctattacttttcgttgattctataaataaagtctacagcgtagagggcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6838 tagcattcattctattacttttcgttgattctataaataaagtctacagcgtagagggcg 6897
Query: 506 aattggataagctaaaggaagtaggtacaggtactcatcctcaaggaagaatggagattt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6898 aattggataagctaaaggaagtaggtacaggtactcatcctcaaggaagaatggagattt 6957
Query: 566 tatcaagaaagttcttctggcagaggaacatgtacttaacgggcattactttgttcttaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6958 tatcaagaaagttcttctggcagaggaacatgtacttaacgggcattactttgttcttaa 7017
Query: 626 catttgtattgagccgtaccgttaaccttgtctgggagttattcgagctaaaagaggatt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7018 catttgtattgagccgtaccgttaaccttgtctgggagttattcgagctaaaagaggatt 7077
Query: 686 atcatttgatcttgaaatcggaggaagataaactggctcctcaacaaaaggcattagaaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7078 atcatttgatcttgaaatcggaggaagataaactggctcctcaacaaaaggcattagaaa 7137
Query: 746 aagaaattgaatctgtagatgaggaaattacaagattgaaggagcaggcctctgctttac 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7138 aagaaattgaatctgtagatgaggaaattacaagattgaaggagcaggcctctgctttac 7197
Query: 806 agaaagagatggagtaaaaccagggaatgggatatgaccttttatgaccttacgtctata 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7198 agaaagagatggagtaaaaccagggaatgggatatgaccttttatgaccttacgtctata 7257
Query: 866 tgtatatatatatataagntagcgaaaaatatttacatgtctatgatttcaatgaacgtg 925
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 7258 tgtatatatatatataactcagcgaaaaatatttacatgtctatga-ttcaatgaacgtt 7316
Query: 926 aaaga-canactttcaagatagacgccgc 953
|||| || ||||||| ||||||||||||
Sbjct: 7317 gaagaccaaactttcaggatagacgccgc 7345
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,583
Number of Sequences: 1807
Number of extensions: 10583
Number of successful extensions: 774
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)