BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC01RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1651 0.0
>3x_Contig1652
Length = 14842
Score = 1651 bits (833), Expect = 0.0
Identities = 902/918 (98%), Gaps = 6/918 (0%)
Strand = Plus / Minus
Query: 46 cttcggcagccattggtgagcataaacgagaaattgaaattgctagaacagaaacaccag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7640 cttcggcagccattggtgagcataaacgagaaattgaaattgctagaacagaaacaccag 7581
Query: 106 atcagaaaagaataaaaactgaagaactgatatctgaatcctcaccttcggttgaccata 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7580 atcagaaaagaataaaaactgaagaactgatatctgaatcctcaccttcggttgaccata 7521
Query: 166 ccagtaacgacaataatcaaataaccaatggcgatcaacaaagcataacgcaaatcactg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7520 ccagtaacgacaataatcaaataaccaatggcgatcaacaaagcataacgcaaatcactg 7461
Query: 226 aagatttggaaatacctttcatggcaccaaggccttcagctatcaacgatgcacttttaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7460 aagatttggaaatacctttcatggcaccaaggccttcagctatcaacgatgcacttttaa 7401
Query: 286 aatactctaaggagtatgtgccaatctcaaattctctcgataaaccatttgcgcatgata 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7400 aatactctaaggagtatgtgccaatctcaaattctctcgataaaccatttgcgcatgata 7341
Query: 346 ttggtaaactccttcattgttatcagtttttaatggcatttaatgcgacccttcaacttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7340 ttggtaaactccttcattgttatcagtttttaatggcatttaatgcgacccttcaacttt 7281
Query: 406 cggaatttagttgggatgattttgtaaattctttgagatttactgatccgcgccaaatga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7280 cggaatttagttgggatgattttgtaaattctttgagatttactgatccgcgccaaatga 7221
Query: 466 tggacgagtacgtaacgattagttatgaggacggtacgggtactaaggtggaaagaatta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7220 tggacgagtacgtaacgattagttatgaggacggtacgggtactaaggtggaaagaatta 7161
Query: 526 atatctggaatgaatcgatatataaatatattgactcttcaaattcagaaaaaatgaagt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7160 atatctggaatgaatcgatatataaatatattgactcttcaaattcagaaaaaatgaagt 7101
Query: 586 tcaccttgtccttggacactatgataaatgatgactatttggacgagttgaaaataacag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7100 tcaccttgtccttggacactatgataaatgatgactatttggacgagttgaaaataacag 7041
Query: 646 gtacttccttgatagtggagtgtttttgttcactgttaaggttgttcatagacaccagtg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7040 gtacttccttgatagtggagtgtttttgttcactgttaaggttgttcatagacaccagtg 6981
Query: 706 gggattggacgacattagtccctttcgagtggcttgaggaggacacggacganaattcga 765
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 6980 gggattggacgacattagtcccttcggagtggcttgaggaggacacggacgaaaattcga 6921
Query: 766 gtgaaaatgaagaattagagatggaag-aaacgacgaagntagtgctgatcttgaatcgt 824
||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 6920 gtgaaaatgaagatttagagatggaagaaaacgacgaagttagtgctgatcttgaatcgt 6861
Query: 825 tattagagaagtgtttaaactatcg-aaagtaaaatggacagacagggcttctaaga-gc 882
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct: 6860 tattagagaagtgtttaaactatcgaaaagtaaaatggacagacaggctttctaagaggc 6801
Query: 883 aatttaac-atgggttctggttgatagntctcttaggtgttctcc-agaattcatgcatt 940
|||||||| |||| ||||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct: 6800 aatttaacaatggtttctggttgatagttctcttaggtgttctccaagacttcatgcatt 6741
Query: 941 taccaa-gtataaatcga 957
|||||| |||||||||||
Sbjct: 6740 taccaatgtataaatcga 6723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7515
Number of Sequences: 1807
Number of extensions: 7515
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)