BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC02RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig101 1287 0.0
3x_Contig764 151 3e-36
>3x_Contig101
Length = 1470
Score = 1287 bits (649), Expect = 0.0
Identities = 665/669 (99%), Gaps = 1/669 (0%)
Strand = Plus / Minus
Query: 39 gcttcgaacagtttgtttcaataccgcagttgcttgtcctgtggcttggttggcaaattg 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gcttcgaacagtttgtttcaataccgcagttgcttgtcctgtggcttggttggcaaattg 609
Query: 99 tagtaatggaccccataagtttagtttgtgaacaaaatatgctccggcaagaacaatgat 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tagtaatggaccccataagtttagtttgtgaacaaaatatgctccggcaagaacaatgat 549
Query: 159 cgataagatgatcgtagcgggattcctgagaatagtaatgattctaccccatctcttttg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 548 cgataagatgatcgtagcgggattcctgagaatagtaatgattctaccccatcccaat-g 490
Query: 219 caaccactagtgcatacatatacaaggggatacgttcggttgtgtttacgatagaccttt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caaccactagtgcatacatatacaaggggatacgttcggttgtgtttacgatagaccttt 430
Query: 279 tagcttcaattattaccaaatctgtgaactgcttgaattttgtaataattttatcttttt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tagcttcaattattaccaaatctgtgaactgcttgaattttgtaataattttatcttttt 370
Query: 339 gcaatgcagaaaggacatgggaaaacctttgttgatgatatagccctgcttcttcttctt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcaatgcagaaaggacatgggaaaacctttgttgatgatatagccctgcttcttcttctt 310
Query: 399 cttggccgccgttctcctcgtaatcggatccatctccatctgattccagtagagcttcag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cttggccgccgttctcctcgtaatcggatccatctccatctgattccagtagagcttcag 250
Query: 459 ggatgagtatctccacattatctttgttctttacaattgcaagggcatccaatacactca 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggatgagtatctccacattatctttgttctttacaattgcaagggcatccaatacactca 190
Query: 519 atgcctgactttttgccaaacgatatgaagcatctacttctgcttcatttttccagaatt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 atgcctgactttttgccaaacgatatgaagcatctacttctgcttcatttttccagaatt 130
Query: 579 tcggcataccgtcatcatcgtatctgaatttgtcgttaaaaacgtttctcatgatatcaa 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tcggcataccgtcatcatcgtatctgaatttgtcgttaaaaacgtttctcatgatatcaa 70
Query: 639 caacattatcttcagtcaaatacccatgaaccgtatgatctaaaaatgaccaagcatttc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 caacattatcttcagtcaaatacccatgaaccgtatgatctaaaaatgaccaagcatttc 10
Query: 699 tttttaatg 707
|||||||||
Sbjct: 9 tttttaatg 1
>3x_Contig764
Length = 2317
Score = 151 bits (76), Expect = 3e-36
Identities = 132/144 (91%), Gaps = 5/144 (3%)
Strand = Plus / Minus
Query: 808 tagtgaattctttcataacgtcatcccatacattgatagtaggtttagcaagtagatgaa 867
||||||||| ||| |||| || || ||||| |||||||||||||||||||||||||||||
Sbjct: 2219 tagtgaattatttaataaagtaataccataaattgatagtaggtttagcaagtagatgaa 2160
Query: 868 gtatggtatcctttgag-ttgatagttagacccttattgaa-ctcgctact-tcgcatta 924
||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 2159 gtatggtatcc-ttgagtttgatagttagacccttattgaacctcgctactatcgcatta 2101
Query: 925 a-ttcacgctcctgaaaatcagca 947
| |||||||||||||| |||||||
Sbjct: 2100 agttcacgctcctgaagatcagca 2077
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8106
Number of Sequences: 1807
Number of extensions: 8106
Number of successful extensions: 251
Number of sequences better than 1.0e-20: 2
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)