BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC03FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1598 0.0
>3x_Contig1502
Length = 14970
Score = 1598 bits (806), Expect = 0.0
Identities = 843/853 (98%), Gaps = 2/853 (0%)
Strand = Plus / Plus
Query: 87 tgagaaagcaaatttaagatcaccagaaacatctttcacccaatctgctgaattctattc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6051 tgagaaagcaaatttaagatcaccagaaacatctttcacccaatctgctgaattctattc 6110
Query: 147 ggcgttcaattctaacaaagttaatagtttgggtttatttgtttcatcaaaatgcattac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6111 ggcgttcaattctaacaaagttaatagtttgggtttatttgtttcatcaaaatgcattac 6170
Query: 207 tcaaacctttacatcattcaaaagctcaaaagatatcgtacgtgaaagctccttgaagtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6171 tcaaacctttacatcattcaaaagctcaaaagatatcgtacgtgaaagctccttgaagtc 6230
Query: 267 cctaatatcattattgaggtcaatatgttctgattcctgtgacgaatcatctttacaaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6231 cctaatatcattattgaggtcaatatgttctgattcctgtgacgaatcatctttacaaaa 6290
Query: 327 acttgtggatgaggcttttaagaacatgaaaaccaacctgaataccgactataagattat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6291 acttgtggatgaggcttttaagaacatgaaaaccaacctgaataccgactataagattat 6350
Query: 387 tatatccaacttgttaataaatgtaccaactttctccaatcaagtgtcttcaaaaatcgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6351 tatatccaacttgttaataaatgtaccaactttctccaatcaagtgtcttcaaaaatcgt 6410
Query: 447 ggatgggttgagaacttatatttcgaaggaatccaatgagacagcattgaatattatgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6411 ggatgggttgagaacttatatttcgaaggaatccaatgagacagcattgaatattatgtt 6470
Query: 507 atcagcatttttccaccatttgtcctcattagaaacagcagacgaagtttcaattgctgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6471 atcagcatttttccaccatttgtcctcattagaaacagcagacgaagtttcaattgctgc 6530
Query: 567 cataaagtccggttttaatgagaataagttacctttgagaaagatatggtacaattcttt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6531 cataaagtccggttttaatgagaataagttacctttgagaaagatatggtacaattcttt 6590
Query: 627 tttaagcaacctaaacactgcaaaactaaatatcattgttcagctcgaagacgaaacact 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6591 tttaagcaacctaaacactgcaaaactaaatatcattgttcagctcgaagacgaaacact 6650
Query: 687 tgcatatctgaaggaggtctgtaataatccattaaaaaatggagaaggttcagcatatgg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6651 tgcatatctgaaggaggtctgtaataatccattaaaaaatggagaaggttcagcatatgg 6710
Query: 747 atgtttcgtttacattcaacatcttattgacttgagtgcaactgcaatactttccaaaat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6711 atgtttcgtttacattcaacatcttattgacttgagtgcaactgcaatactttccaaaat 6770
Query: 807 cgatgacatccttgaagcacacaaggagtcataccgtctttcttggatatatgttaccct 866
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6771 cgatgacatccttgaagcacacaaggagtcatacggtctttcttggatatatgttaccct 6830
Query: 867 atcccacgc-agtgcccttttgacagagaaagcaagctntacagctttctaactgcgcat 925
|| |||||| |||||| ||| |||||||||||||||| |||||||| ||||||||||
Sbjct: 6831 at-ccacgcaagtgccttttgaacagagaaagcaagctttacagcttctaaactgcgcat 6889
Query: 926 tttacaggaaccc 938
|||||||||||||
Sbjct: 6890 tttacaggaaccc 6902
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7414
Number of Sequences: 1807
Number of extensions: 7414
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)