BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC03RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1436 1608 0.0
>3x_Contig1436
Length = 9951
Score = 1608 bits (811), Expect = 0.0
Identities = 903/921 (98%), Gaps = 10/921 (1%)
Strand = Plus / Plus
Query: 44 ctttagcttctgcattcaatttttata-caacggttgaggaatcacagtgctaccaaatt 102
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 563 ctttagcttctgcattcaattttgataacaacggttgaggaatcacagtgctaccaaatt 622
Query: 103 ctctatcagaaacggctgcctgcaatatcccaccggaaatcttgcccggatgatgcaaca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctctatcagaaacggctgcctgcaatatcccaccggaaatcttgcccggatgatgcaaca 682
Query: 163 aatagtggatcgtgttttgagatccagtggaatgacccatcaacagcaccatttttttcc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 683 aatagtggatcgtgttttgagatccagtggaatgacccatcaacagcaccatttctctcc 742
Query: 223 catccttcttcaaataatctaccaacgagtcaatctcttcgtcatcacgtttcaaagaac 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 catccttcttcaaataatctaccaacgagtcaatctcttcgtcatcacgtttcaaagaac 802
Query: 283 cagttccaaacccgatataactactggttatctgaatttggaccaaagagtagcccaatg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cagttccaaacccgatataactactggttatctgaatttggaccaaagagtagcccaatg 862
Query: 343 gatccaatgccttggctaacccttgcaaataaggaacagtcaacaatccatcggtaagtc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gatccaatgccttggctaacccttgcaaataaggaacagtcaacaatccatcggtaagtc 922
Query: 403 caccaacgaatatcaaggctttcgatttaccaatcgggtcaaattcaaaagctactcttt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 caccaacgaatatcaaggctttcgatttaccaatcgggtcaaattcaaaagctactcttt 982
Query: 463 tttccttaaaaagatgcaaggtgccaggaacttttgtgctagacatcttttgatttcacc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tttccttaaaaagatgcaaggtgccaggaacttttgtgctagacatcttttgatttcacc 1042
Query: 523 gtatcctcaattaactgcaccgatctcaattgagcagtacatatacattcgtcctactct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 gtatcctcaattaactgcaccgatctcaattgagcagtacatatacattcgtcctactct 1102
Query: 583 cactaccagaaacatctctggtaagcatatactcattatcaatgagcacttatacattct 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 cactaccagaaacatctctggtaagcatatactcattatcaatgagcacttatacattct 1162
Query: 643 tactttcagatagatagagagaaagggtgattgatatgcagggcgggaataaaaactctt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 tactttcagatagatagagagaaagggtgattgatatgcagggcgggaataaaaactctt 1222
Query: 703 ggcggacataggaaaaaagaatttgatcacgtgatgaatcacgtgatttacctctttttc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1223 ggcggacataggaaaaaagaatttgatcacgtgatgaatcacgtgatttacctctttttc 1282
Query: 763 cccgcttttattatttcctgctgattgcgtctctggc-agggaagaat-ccccggtttta 820
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 1283 cccgcttttattatttcctgctgattgcgtctctggcaagggaagaatcccccggtttta 1342
Query: 821 agactttcgtctccgga-tgctaatatctgatgaaaggcttgaaga-gagtccgggncat 878
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 1343 agactttcgtctccggattgctaatatctgatgaaaggcttgaagaggagtccgggcaat 1402
Query: 879 agttagtgacgtccgtcactca-ttgccactc-nacttta-ttatggag-atataatggc 934
|||||||||||||||||||||| ||||||||| |||||| |||||||| || ||||||
Sbjct: 1403 agttagtgacgtccgtcactcagttgccactcaaactttagttatggagaattaaatggc 1462
Query: 935 tataattaa-tacgatcaaac 954
||||||||| |||||||||||
Sbjct: 1463 tataattaagtacgatcaaac 1483
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7272
Number of Sequences: 1807
Number of extensions: 7272
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)