BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC04FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1002 1645 0.0
>3x_Contig1002
Length = 4066
Score = 1645 bits (830), Expect = 0.0
Identities = 855/861 (99%), Gaps = 2/861 (0%)
Strand = Plus / Plus
Query: 90 aaggacgatcgctgacaggatcacaaacaggaaacgaaaagaaaaaattgaaaatgaaaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3137 aaggacgatcgctgacaggatcacaaacaggaaacgaaaagaaaaaattgaaaatgaaaa 3196
Query: 150 attcaatacagaaagcgcatctcatctcaacgcatatatttggccaatagaggaaattac 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3197 attcaatacagaaagcgcatctcatctcaacgcatatatttggccaatagaggaaattac 3256
Query: 210 ttacagaggaagacacatgtcctcataaccccgataataatgtcctttgcatttggcttc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3257 ttacagaggaagacacatgtcctcataaccccgataataatgtcctttgcatttggcttc 3316
Query: 270 tctaacgaagatttcagtgatgatgaactagatattgccaatcaaaatacagatgataag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3317 tctaacgaagatttcagtgatgatgaactagatattgccaatcaaaatacagatgataag 3376
Query: 330 ccatctacttctgtccctcgaatcaatccattggattccgaagtgttactaggagaatca 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3377 ccatctacttctgtccctcgaatcaatccattggattccgaagtgttactaggagaatca 3436
Query: 390 gtgaatcaacccaaatatattgatctggatgatctactacgttcactcgcgaatgtccgt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3437 gtgaatcaacccaaatatattgatctggatgatctactacgttcactcgcgaatgtccgt 3496
Query: 450 ctatcttttgaagaagtgcaaactccaacaacaaactctgttctttacagacgtgaacta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3497 ctatcttttgaagaagtgcaaactccaacaacaaactctgttctttacagacgtgaacta 3556
Query: 510 tttgacgttaaacatcaattgatgtcagaagtggattcaggcacaaataatgttgaattg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3557 tttgacgttaaacatcaattgatgtcagaagtggattcaggcacaaataatgttgaattg 3616
Query: 570 gagattttgatgggtgaaaccaatgaagatttgaggagaaatgtgtacgaaggtggtttg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3617 gagattttgatgggtgaaaccaatgaagatttgaggagaaatgtgtacgaaggtggtttg 3676
Query: 630 aaatcatgggaatgttcaatagatctagtagactcatttgttaaaaatccagcacaaatt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3677 aaatcatgggaatgttcaatagatctagtagactcatttgttaaaaatccagcacaaatt 3736
Query: 690 tcccagtgtcaaaatataatagagctaggatgtgggacgtcgcttccatcggaaattctt 749
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3737 tcccagtgtcaaaatataatagagctaggatgtgggacgtcgcttccatcggaatttctt 3796
Query: 750 tttatggaatatctaagatccaacatcaataccgggattaatttcacattatgtgactat 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797 tttatggaatatctaagatccaacatcaataccgggattaatttcacattatgtgactat 3856
Query: 810 aatgaaagtgtgattagattggtatccattccaaatttgatcgtatcctgngcgaaaact 869
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3857 aatgaaagtgtgattagattggtatccattccaaatttgatcgtatcctgggcgaaaact 3916
Query: 870 gtgatcagtaatgaacaatggatagagctaccagccttctgaagattcgaacatccccaa 929
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 3917 gtgatcagtaatgaacaatggatagagctacaag-cttctgaagattcgaacat-cccaa 3974
Query: 930 tcgcctctgatgaaatacttc 950
|||||||||||||| ||||||
Sbjct: 3975 tcgcctctgatgaattacttc 3995
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8437
Number of Sequences: 1807
Number of extensions: 8437
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)