BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZC04RM1.SCF screened BAC_end
         (951 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1394                                                        1635   0.0  

>3x_Contig1394 
          Length = 5721

 Score = 1635 bits (825), Expect = 0.0
 Identities = 845/853 (99%)
 Strand = Plus / Minus

                                                                       
Query: 49  taccgttccaacactgacgataagtacttgtgtacttggggtattgacagtgcctacgtc 108
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtc 797

                                                                       
Query: 109 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 737

                                                                       
Query: 169 atggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 677

                                                                       
Query: 229 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 617

                                                                       
Query: 289 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 557

                                                                       
Query: 349 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 497

                                                                       
Query: 409 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 437

                                                                       
Query: 469 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggttgt 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggttgt 377

                                                                       
Query: 529 accgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttttca 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 accgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttttca 317

                                                                       
Query: 589 gaggcattggcgggatgttatttaccgttgctgtttttcttttcttccctagtctgctat 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaggcattggcgggatgttatttaccgttgctgtttttcttttcttccctagtctgctat 257

                                                                       
Query: 649 ctgaatcctctgtatctgtcaaaaattgaaatggaactaacatcattaatggtgtcatgt 708
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgaatcctctgtatctgtcaaaaattgaaatggaactaacatcattaatggtgtcatgt 197

                                                                       
Query: 709 tgtgcgtgtgtgcatatttttgtgagtactatctncatganagcacgaagcattttcaat 768
           |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 196 tgtgcgtgtgtgcatatttttgtgagtactatctccatgaaagcacgaagcattttcaat 137

                                                                       
Query: 769 cgacctantagaatgtaccctcattgcgtctcgtacgttttggcatggcaccatcttccg 828
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cgacctataagaatgtaccctcattgcgtctcgtacgttttggcatggcaccatcttccg 77

                                                                       
Query: 829 atgttncattacactctccatttcattctgaatgagtatagaagaattgagttgctcaat 888
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  atgtttcattacactctccatttcattctgaatgagtatagaagaattgagttgctcaat 17

                        
Query: 889 tcccaccccgcga 901
           ||| |||| ||||
Sbjct: 16  tccaacccggcga 4


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5569
Number of Sequences: 1807
Number of extensions: 5569
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)