BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC07RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1713 0.0
>3x_Contig1640
Length = 15521
Score = 1713 bits (864), Expect = 0.0
Identities = 909/918 (99%), Gaps = 5/918 (0%)
Strand = Plus / Plus
Query: 48 cttagagagacgaaagtaggggtcgtagtcaaccaatttaagaaatcttccaatccagac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cttagagagacgaaagtaggggtcgtagtcaaccaatttaagaaatcttccaatccagac 525
Query: 108 atcgtcaaattggtgaagaagatgattttatcctggaaagatgctgtggctcgtgaaaag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atcgtcaaattggtgaagaagatgattttatcctggaaagatgctgtggctcgtgaaaag 585
Query: 168 aaaagcaaactaagcagcaattcctcatctacaagtaacaataatggtacaagcggtgga 227
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 586 aaaagcaaactaagcagcaattcctcatctacaagtaccaataatggtacaagcggtgga 645
Query: 228 gaagcagtaaagaaggagaaatatgtcagcaaagctccaagaaatgctaagaacgacggt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gaagcagtaaagaaggagaaatatgtcagcaaagctccaagaaatgctaagaacgacggt 705
Query: 288 gtgaaaacggatatatatggtgtcaagattagagatatggctattagggcattatatgat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gtgaaaacggatatatatggtgtcaagattagagatatggctattagggcattatatgat 765
Query: 348 gcattggcaaaagaaagtgaacatcctccagtagctatcctagatacagtaatgagtatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gcattggcaaaagaaagtgaacatcctccagtagctatcctagatacagtaatgagtatt 825
Query: 408 gagacagaaatggctaatctgttcaatcccgagtctgacgaaaagggatatcgtgacaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gagacagaaatggctaatctgttcaatcccgagtctgacgaaaagggatatcgtgacaaa 885
Query: 468 tacagaataatttactcaaatataatctccaagaacaatccagatttgaaacatagaatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tacagaataatttactcaaatataatctccaagaacaatccagatttgaaacatagaatt 945
Query: 528 acgaatggagaagtatcagccaaacatttagtgactgctgatcctaaggacttggcaccg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 acgaatggagaagtatcagccaaacatttagtgactgctgatcctaaggacttggcaccg 1005
Query: 588 gaacatttaaagaagaaaattgaggaaattgagaaacagaatttgtttaatgcacaaggt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gaacatttaaagaagaaaattgaggaaattgagaaacagaatttgtttaatgcacaaggt 1065
Query: 648 gcaactgtagaaagatcagtaacagatagattccaatgtggcaaatgtaaacaaagaaaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gcaactgtagaaagatcagtaacagatagattccaatgtggcaaatgtaaacaaagaaaa 1125
Query: 708 gtatcatactaccaactacaaacaagatctgcggatgaacctcttactactttttgtaca 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 gtatcatactaccaactacaaacaagatctgcggatgaacctcttactactttttgtaca 1185
Query: 768 tgtgagaatttgcggt-atagatggaagttctcgtagttgaaattctcactttgaa-ttt 825
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1186 tgtgagaa-ttgcggtaatagatggaagttctcgtagttgaaattctcactttgaatttt 1244
Query: 826 acgaagatagccttggcatatgatacactaaagcagcatgatgatggcagtgatcaagca 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 acgaagatagccttggcatatgatacactaaagcagcatgatgatggcagtgatcaagca 1304
Query: 886 ctaaaaactc-ttcgntatttcattgctagctagatgtgtacacatagcattcgncaatt 944
|| ||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1305 ct-aaaactctttcgttatttcattgctagctagatgtgtacacatagcatccgccaatt 1363
Query: 945 ctacatcatacattcttc 962
||||||||||||||||||
Sbjct: 1364 ctacatcatacattcttc 1381
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7773
Number of Sequences: 1807
Number of extensions: 7773
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)