BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC08FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1285 0.0
>3x_Contig1605
Length = 12373
Score = 1285 bits (648), Expect = 0.0
Identities = 828/870 (95%), Gaps = 16/870 (1%)
Strand = Plus / Plus
Query: 87 cgattactaggatcatatcttagaaagtctccattaacatcgactgtttcggagcctgga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9342 cgattactaggatcatatcttagaaagtctccattaacatcgactgtttcggagcctgga 9401
Query: 147 atcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgtcct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402 atcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgtcct 9461
Query: 207 tccaaaataagcacaactaaaataaatgaacctgcctctaagttggaaaacacttcaacc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9462 tccaaaataagcacaactaaaataaatgaacctgcctctaagttggaaaacacttcaacc 9521
Query: 267 gtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcgttg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9522 gtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcgttg 9581
Query: 327 cgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaagaact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9582 cgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaagaact 9641
Query: 387 ttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgctaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9642 ttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgctaaa 9701
Query: 447 cttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaagcgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9702 cttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaagcgt 9761
Query: 507 ttctttgaaagggaatgtttcactgaaattcccaaaataacagaagaagtactaagcgat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9762 ttctttgaaagggaatgtttcactgaaattcccaaaataacagaagaagtactaagcgat 9821
Query: 567 attcaagagttcgaagactatattggacttttgacgcacaccanattccatcacaaaggg 626
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9822 attcaagagttcgaagactatattggacttttgacgcacaccaaattccatcacaaaggg 9881
Query: 627 tcatctttacaagacgggataataccgaaacttcttaagaa-ttgctacatncttctaa- 684
||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 9882 tcatctttacaagacggaataataccgaaacttcttaagaatttgctacatccttctaat 9941
Query: 685 ttacgaattgcg-cattg-aaacggcttcagtgttc-acgatgt-atatactactacggn 740
|||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 9942 ttacgaattgcgccattgaaaacggcttcagtgttcaacgatgtaatatactactacgg- 10000
Query: 741 naacaaga--cattttgccacctgcagagagctttatgcacaaatggaatccgaaggtat 798
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10001 aaacaagaacaattttgccacctgcagagagctttatgcacaaatgaaatccgaaggtat 10060
Query: 799 cggacccaacgtnccaaactt-taatttaatgnttaggaaccttcttcagg-actncaag 856
|| ||| ||||| |||||||| |||||||||| | |||||||||| ||||| ||| || |
Sbjct: 10061 cgcaccaaacgt-ccaaacttataatttaatgttaaggaaccttc-tcaggaactccagg 10118
Query: 857 gttatttaacaacaacttccatttcg-ggagcaata-tttatcttggaaggattaaaaaa 914
| ||| |||||||||| |||| ||| | ||||||| ||||||| | |||||| ||||||
Sbjct: 10119 ttaattaaacaacaactcccatatcgcgaagcaatattttatctggaaaggatgaaaaaa 10178
Query: 915 g-gaaattatttggcgatgtgataacttgg 943
| ||| ||| || |||||||||||||||
Sbjct: 10179 gagaatatatctgcagatgtgataacttgg 10208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6246
Number of Sequences: 1807
Number of extensions: 6246
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)