BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZC08RM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1776                                                        1657   0.0  

>3x_Contig1776 
          Length = 26138

 Score = 1657 bits (836), Expect = 0.0
 Identities = 894/911 (98%), Gaps = 3/911 (0%)
 Strand = Plus / Minus

                                                                         
Query: 45    ctttgtccactttgttggatgcttagtggagagctgccaaccctgccactgtcagatggt 104
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10998 ctttgtccactttgttggatgctaagtggagagctgccaaccctgccactgtcagatggt 10939

                                                                         
Query: 105   tcaagaccgttgtcgcttccccaatcatctctgaagctttcggtaagaccgaattcgctg 164
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10938 tcaagaccgttgtcgcttccccaatcatctctgaagctttcggtaagaccgaattcgctg 10879

                                                                         
Query: 165   aagaagctttgaaatacactcctccaaagaaggaaaagaaggaacaaccaatgtttggaa 224
             ||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||
Sbjct: 10878 aagaagctttgaaatacactcctccaaagaaggaaaagaaggaacaaccaaagaa-ggaa 10820

                                                                         
Query: 225   caaccaaagaagaaggaagaagctgctgccgctccagctccagctgctgaagccgaacaa 284
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10819 caaccaaagaagaaggaagaagctgctgccgctccagctccagctgctgaagccgaacaa 10760

                                                                         
Query: 285   ccaaagaagccaaagcatccattggaacttttgggtaaggccaccttcaacttggaagaa 344
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10759 ccaaagaagccaaagcatccattggaacttttgggtaaggccaccttcaacttggaagaa 10700

                                                                         
Query: 345   tggaagagaacttactctaacgaagacacaagaccagttgccttaccatggttctgggaa 404
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10699 tggaagagaacttactctaacgaagacacaagaccagttgccttaccatggttctgggaa 10640

                                                                         
Query: 405   cacttcaaccctgaagaatactccatctggaaggttggttacaaatacaacgatgaatta 464
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10639 cacttcaaccctgaagaatactccatctggaaggttggttacaaatacaacgatgaatta 10580

                                                                         
Query: 465   accttgactttcatgtccaacaacttagttggtggtttcttcaacagattgtccgcctct 524
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10579 accttgactttcatgtccaacaacttagttggtggtttcttcaacagattgtccgcctct 10520

                                                                         
Query: 525   gttaaatacatgttcggttgtctagtcgtttatggtgaaaacaacaacaacggtattgtc 584
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10519 gttaaatacatgttcggttgtctagtcgtttatggtgaaaacaacaacaacggtattgtc 10460

                                                                         
Query: 585   ggtgccatcgttgtccgtggtcaagactttgccccagccttcgatgtggctccagattgg 644
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10459 ggtgccatcgttgtccgtggtcaagactttgccccagccttcgatgtggctccagattgg 10400

                                                                         
Query: 645   gaatcctacgaatactccaagttggacccaacaaaggaagaagacaaggaattcatcaac 704
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10399 gaatcctacgaatactccaagttggacccaacaaaggaagaagacaaggaattcatcaac 10340

                                                                         
Query: 705   aacatgtgggcttgggataagccagttgttgttaacggtgaaaacaaggaaattgtcgat 764
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10339 aacatgtgggcttgggataagccagttgttgttaacggtgaaaacaaggaaattgtcgat 10280

                                                                         
Query: 765   ggtaaggtcttgaaataagcaagaatgttcactgcgctccaagc-atatttcatcaattc 823
             ||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||
Sbjct: 10279 ggtaaggtcttgaaataagcaagatgtttcactgcgctccaagcaatatttcatcaattc 10220

                                                                         
Query: 824   ctaatctcgttttnttcacatactcttattttcaacctc-nagtacattttccacttctc 882
             ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 10219 ctaatctcgtttttttcacatactcttattttcaacctcttagtacattttccacttctc 10160

                                                                         
Query: 883   gggttgtataattaatttacgtacggcttttacttanntaaatctcatgaaatagaacac 942
             || ||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||
Sbjct: 10159 ggtttgtataattaatttacgtacggctttaacttagttaaatctcatgaaatagaacac 10100

                        
Query: 943   gnaaacaatct 953
             | |||||||||
Sbjct: 10099 gaaaacaatct 10089


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8311
Number of Sequences: 1807
Number of extensions: 8311
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)