BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC09RM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1397 1709 0.0
>3x_Contig1397
Length = 8011
Score = 1709 bits (862), Expect = 0.0
Identities = 913/928 (98%), Gaps = 2/928 (0%)
Strand = Plus / Plus
Query: 51 tctctcaaaataattctttacaaaatttgaatttgcaaagtgacgctcttcaatgaggtg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3498 tctctcaaaataattctttacaaaatttgaatttgcaaagtgacgctcttcaatgaggtg 3557
Query: 111 ggaacacgtcctatgataaaatccgtcaacaaaaatgttcgatagaattaatagctgaaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3558 ggaacacgtcctatgataaaatccgtcaacaaaaatgttcgatagaattaatagctgaaa 3617
Query: 171 ttgtttctttaactccttcactctctaaactaagtagcaaaaactatgtttttaagatcc 230
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 3618 ttgtttctttaactccttcactctctaaactaagtagcaaaaactaggagaaaaagatcc 3677
Query: 231 aaagacacgcagcggctttccaaaagaaaactaggacagataaaacaggattatctaacc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3678 aaagacacgcagcggctttccaaaagaaaactaggacagataaaacaggattatctaacc 3737
Query: 291 gaaaaccaacacagatccaactgaactgaatcaagtacaggaaatccgaagaatattctg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3738 gaaaaccaacacagatccaactgaactgaatcaagtacaggaaatccgaagaatattctg 3797
Query: 351 tatttcaaatcaaataaaaccaactcacaaacaccgtttattaaacaagtgatggatggt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798 tatttcaaatcaaataaaaccaactcacaaacaccgtttattaaacaagtgatggatggt 3857
Query: 411 ggattaaaaaaaaaagaaaaaaagatgagggaaaagaggatgatatatggttcggcctgg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3858 ggattaaaaaaaaaagaaaaaaagatgagggaaaagaggatgatatatggttcggcctgg 3917
Query: 471 tgaatgtaatacttccccgagtcctaataatatatcccttgagtgatgaagaactttgtc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3918 tgaatgtaatacttccccgagtcctaataatatatcccttgagtgatgaagaactttgtc 3977
Query: 531 cgttgaccttctgaaaacctcatcaaaaagatacctaactgtacgtacacaaaataacaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3978 cgttgaccttctgaaaacctcatcaaaaagatacctaactgtacgtacacaaaataacaa 4037
Query: 591 gcatttaaactatataggttgaaatttatatatttttctcttggttttttttctttcatt 650
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4038 gcatttaaactatataggttgaaatttatatatttttctcttgtttttttttctttcatt 4097
Query: 651 ttgacaaatcgaagaaaaagaaaaagaacttcgttctaaagtggaaacttaatgagcttt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4098 ttgacaaatcgaagaaaaagaaaaagaacttcgttctaaagtggaaacttaatgagcttt 4157
Query: 711 aagttagttcagctgaaatatactgactgacattcagaaaaactgaaattgttctagtta 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4158 aagttagttcagctgaaatatactgactgacattcagaaaaactgaaattgttctagtta 4217
Query: 771 caaagacacgaagtagggaaaaaggaaaaagaagcgaaaaattataagattgtgaggtct 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4218 caaagacacgaagtagggaaaaaggaaaaagaagcgaaaaattataagattgtgaggtct 4277
Query: 831 gaaaactggaaattcgaatcaataccgggttgaatgaatcatgatccagaaagaatacag 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4278 gaaaactggaaattcgaatcaataccgggttgaatgaatcatgatccagaaagaatacag 4337
Query: 891 caaacagagaaaatttttttctgtgtcagcatccgcttgcggggtacttttaggntgagt 950
|||||||||||||||||||||||||||||||||||| |||||||| | ||||| |||||
Sbjct: 4338 caaacagagaaaatttttttctgtgtcagcatccgc-tgcggggt-ttcttagggtgagt 4395
Query: 951 ggngtaaacatcgaatgactatacaggg 978
|| ||||||||||||||||| ||||||
Sbjct: 4396 gggttaaacatcgaatgactaaacaggg 4423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,770
Number of Sequences: 1807
Number of extensions: 12770
Number of successful extensions: 243
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)