BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC10FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig781 446 e-125
>3x_Contig781
Length = 2349
Score = 446 bits (225), Expect = e-125
Identities = 305/331 (92%), Gaps = 3/331 (0%)
Strand = Plus / Plus
Query: 635 tattcgactcagtttcaaaagtacctg-acacagaaaagccttgtttggttggacgatcc 693
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4 tattcgactcagtttcaaaagtacctggacacagaaaagccttgtttggttggacgatcc 63
Query: 694 tgttgtttgtacagaagcgtgctgtttccgagacaagccctcgcttaaagaanaatcaga 753
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 64 tgttgtttgtacagaagcgtgctgtttccgagacaagccctcgctaaaagaaaaatcaga 123
Query: 754 ggacccagntttctttttttttttttggatattttcctatcacttgccattcagacccga 813
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 124 ggacccagtttcctttttttttttttggatattttcctatcacttgccattcagaccgaa 183
Query: 814 agttatatttttttcaacgtgacagatattcacagaacatcttataggaagtnaggnatt 873
||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||| ||
Sbjct: 184 agttata-ttttttcaacgtgacagatattcacagaacatctaatagaaagtaaggattt 242
Query: 874 tcaggcgatgagcagtgccagccaagggaatgctactggnagtaagagcccaggacagct 933
|||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||
Sbjct: 243 caaggcgatgagcagtgcaagcaaagggaatgctactggaagtaagagcccagagcagct 302
Query: 934 cttannagganagangnnacttgctagtaca 964
|||| |||| ||| | |||||||||||||
Sbjct: 303 ctta-gaggagagacggcacttgctagtaca 332
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,874
Number of Sequences: 1807
Number of extensions: 13874
Number of successful extensions: 270
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)