BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC10RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1210 1711 0.0
>3x_Contig1210
Length = 6392
Score = 1711 bits (863), Expect = 0.0
Identities = 902/914 (98%), Gaps = 2/914 (0%)
Strand = Plus / Minus
Query: 52 cttgaggtgaataaattgtgagactaagaaaaaaa-gtaagaagagaaaaagttgtaaaa 110
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 5465 cttgaggtgaataaattgtgagacaaagaaaaaaaagtaagaagagaaaaagttgtaaaa 5406
Query: 111 cccttcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtttc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405 cccttcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtttc 5346
Query: 171 ggttaacatctttaattaaaatgggaggttggtcataacaaatatcattatattttttta 230
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 5345 ggttaacatctttaattaaaatgggaggttggtcataacaaatatcattatatcttggta 5286
Query: 231 gattttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgtct 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5285 gattttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgtct 5226
Query: 291 gggcatgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcacca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5225 gggcatgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcacca 5166
Query: 351 ccttgttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcggtt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5165 ccttgttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcggtt 5106
Query: 411 tgtaattcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaact 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5105 tgtaattcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaact 5046
Query: 471 ctagcgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagccttg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5045 ctagcgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagccttg 4986
Query: 531 tccaatttttcttcgaattccttcaaagaagcttcggtatcgttggccaattggtcaccc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4985 tccaatttttcttcgaattccttcaaagaagcttcggtatcgttggccaattggtcaccc 4926
Query: 591 ttgttggcggtttcaatagccttctttctggtttcatcttgttctctgaacttttcagca 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4925 ttgttggcggtttcaatagccttctttctggtttcatcttgttctctgaacttttcagca 4866
Query: 651 tcgctaaccatttgctcgatttcagattcggacaaaccggaagaaccagcaacagtgatg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4865 tcgctaaccatttgctcgatttcagattcggacaaaccggaagaaccagcaacagtgatg 4806
Query: 711 gaagcatccttgttggaagccttgtctctagcagagacgttgatgataccatcggcatca 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4805 gaagcatccttgttggaagccttgtctctagcagagacgttgatgataccatcggcatca 4746
Query: 771 atatcgaaagaaacttcgatttgtgggacaccctttgnagctggtgggataccagac-na 829
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 4745 atatcgaaagaaacttcgatttgtgggacaccctttggagctggtgggataccagacaaa 4686
Query: 830 gtgaagttaccgatcaacttgntgnctctgaccaattctctttcaccttggaaaactctg 889
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 4685 gtgaagttaccgatcaacttgttgtctctgaccaattctctttcaccttggaaaactctg 4626
Query: 890 attnccacggaggtttgaccagcagcagcagtggagaagatttgagacttcttgggtgga 949
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4625 atttccacggaggtttgaccagcagcagcagtggagaagatttgagacttcttggttgga 4566
Query: 950 atagtagtgtttct 963
||||||||||||||
Sbjct: 4565 atagtagtgtttct 4552
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8265
Number of Sequences: 1807
Number of extensions: 8265
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)