BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZC11FM1.SCF screened BAC_end
         (959 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig660                                                         1239   0.0  

>3x_Contig660 
          Length = 1656

 Score = 1239 bits (625), Expect = 0.0
 Identities = 701/719 (97%), Gaps = 6/719 (0%)
 Strand = Plus / Plus

                                                                       
Query: 244 gatattaatgt-gggcgatattttccaaggttct-gtgaagaatgttactgactttggtg 301
           ||||||||||| |||||||||||||||  ||||| |||||||||||||||||||||||||
Sbjct: 4   gatattaatgttgggcgatattttccattgttctcgtgaagaatgttactgactttggtg 63

                                                                       
Query: 302 ttttcgtaaagttggacggtacagtcaacgtaactggtttggcccacaaaagtgaagtcg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ttttcgtaaagttggacggtacagtcaacgtaactggtttggcccacaaaagtgaagtcg 123

                                                                       
Query: 362 ctgacgctaaaatagataatttacaaaaccttttcggtgaaggtgacaaagttaaagcaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ctgacgctaaaatagataatttacaaaaccttttcggtgaaggtgacaaagttaaagcaa 183

                                                                       
Query: 422 tcgtcttaaagaccaatcctgaaaagaagcaaatatctctaggtttgaaggcttcatact 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcgtcttaaagaccaatcctgaaaagaagcaaatatctctaggtttgaaggcttcatact 243

                                                                       
Query: 482 tcactaacgagaagcctgaaaccgttgaagaaggtaatgaagaagaagaagagctcgaag 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcactaacgagaagcctgaaaccgttgaagaaggtaatgaagaagaagaagagctcgaag 303

                                                                       
Query: 542 gtgtagatgatctagatatcgatatggaagatggacagaaggaaagcgatgcttccgaca 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtgtagatgatctagatatcgatatggaagatggacagaaggaaagcgatgcttccgaca 363

                                                                       
Query: 602 aagatgaagacaaagatgaagaccaagatgagatcatggacgatgctcaatttggacatt 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aagatgaagacaaagatgaagaccaagatgagatcatggacgatgctcaatttggacatt 423

                                                                       
Query: 662 ccgattcagaagcggaagacacaactagacctaaaaattctgccccagtcagcactgacg 721
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ccgattcagaagcggaagacacaactagacctaaaaattctgccccagtcagcactgacg 483

                                                                       
Query: 722 gactttcattgagtaccggattcgattggactgncagcatccttgaccaagctcaagacg 781
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 484 gactttcattgagtaccggattcgattggactgcaagcatccttgaccaagctcaagacg 543

                                                                       
Query: 782 aagaaagatcctccgaagaagatgaggacttcatttaatcttagaaagc-anagaagaag 840
           |||||  |||||||||||||||||||||||||||| |||| ||| |||| | ||||||||
Sbjct: 544 aagaagaatcctccgaagaagatgaggacttcattaaatc-taggaagcaaaagaagaag 602

                                                                       
Query: 841 aagactcagattgttcaagattagactgttgatatcaacaccagggattccagaatccgt 900
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 603 aagactcagattgttcaagataagactgttgatatcaacacca-ggattccagaatccgt 661

                                                                      
Query: 901 aggcgactttgaacgtttaatcatggggtatcc-aactcttccgtggtatggatgaact 958
           |||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||
Sbjct: 662 aggcgactttgaacgtttaatcatgggtaatccaaactcttccgtggtatggatgaact 720


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8535
Number of Sequences: 1807
Number of extensions: 8535
Number of successful extensions: 115
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)