BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC20ZC11FM1.SCF screened BAC_end (959 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig660 1239 0.0 >3x_Contig660 Length = 1656 Score = 1239 bits (625), Expect = 0.0 Identities = 701/719 (97%), Gaps = 6/719 (0%) Strand = Plus / Plus Query: 244 gatattaatgt-gggcgatattttccaaggttct-gtgaagaatgttactgactttggtg 301 ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 4 gatattaatgttgggcgatattttccattgttctcgtgaagaatgttactgactttggtg 63 Query: 302 ttttcgtaaagttggacggtacagtcaacgtaactggtttggcccacaaaagtgaagtcg 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64 ttttcgtaaagttggacggtacagtcaacgtaactggtttggcccacaaaagtgaagtcg 123 Query: 362 ctgacgctaaaatagataatttacaaaaccttttcggtgaaggtgacaaagttaaagcaa 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 ctgacgctaaaatagataatttacaaaaccttttcggtgaaggtgacaaagttaaagcaa 183 Query: 422 tcgtcttaaagaccaatcctgaaaagaagcaaatatctctaggtttgaaggcttcatact 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 tcgtcttaaagaccaatcctgaaaagaagcaaatatctctaggtttgaaggcttcatact 243 Query: 482 tcactaacgagaagcctgaaaccgttgaagaaggtaatgaagaagaagaagagctcgaag 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 tcactaacgagaagcctgaaaccgttgaagaaggtaatgaagaagaagaagagctcgaag 303 Query: 542 gtgtagatgatctagatatcgatatggaagatggacagaaggaaagcgatgcttccgaca 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 304 gtgtagatgatctagatatcgatatggaagatggacagaaggaaagcgatgcttccgaca 363 Query: 602 aagatgaagacaaagatgaagaccaagatgagatcatggacgatgctcaatttggacatt 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364 aagatgaagacaaagatgaagaccaagatgagatcatggacgatgctcaatttggacatt 423 Query: 662 ccgattcagaagcggaagacacaactagacctaaaaattctgccccagtcagcactgacg 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 424 ccgattcagaagcggaagacacaactagacctaaaaattctgccccagtcagcactgacg 483 Query: 722 gactttcattgagtaccggattcgattggactgncagcatccttgaccaagctcaagacg 781 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 484 gactttcattgagtaccggattcgattggactgcaagcatccttgaccaagctcaagacg 543 Query: 782 aagaaagatcctccgaagaagatgaggacttcatttaatcttagaaagc-anagaagaag 840 ||||| |||||||||||||||||||||||||||| |||| ||| |||| | |||||||| Sbjct: 544 aagaagaatcctccgaagaagatgaggacttcattaaatc-taggaagcaaaagaagaag 602 Query: 841 aagactcagattgttcaagattagactgttgatatcaacaccagggattccagaatccgt 900 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct: 603 aagactcagattgttcaagataagactgttgatatcaacacca-ggattccagaatccgt 661 Query: 901 aggcgactttgaacgtttaatcatggggtatcc-aactcttccgtggtatggatgaact 958 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct: 662 aggcgactttgaacgtttaatcatgggtaatccaaactcttccgtggtatggatgaact 720 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8535 Number of Sequences: 1807 Number of extensions: 8535 Number of successful extensions: 115 Number of sequences better than 1.0e-20: 1 length of query: 959 length of database: 10,358,551 effective HSP length: 16 effective length of query: 943 effective length of database: 10,329,639 effective search space: 9740849577 effective search space used: 9740849577 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)