BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC11RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig905 1368 0.0
3x_Contig1017 186 5e-47
3x_Contig1237 103 6e-22
3x_Contig1622 101 2e-21
>3x_Contig905
Length = 2723
Score = 1368 bits (690), Expect = 0.0
Identities = 733/744 (98%), Gaps = 3/744 (0%)
Strand = Plus / Minus
Query: 46 gcttatataaaaagaattaacgttttcttcagttttatgatgtagtaatatttgagtata 105
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1993 gcttatataaaaagaattaacgttcacttcagttttatgatgtagtaatatttgagtata 1934
Query: 106 gcattttttggaagtaaaattttggtgaaataacgctgacgacatacgcttcattcatcc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 gcattttttggaagtaaaattttggtgaaataacgctgacgacatacgcttcattcatcc 1874
Query: 166 caagattatatttgtggatttgcgttgatttaaagaggtttttaagcaacattcatttaa 225
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1873 caagatta-atttgtggatttgcgttgatttaaagaggtttttaagcaacattcatataa 1815
Query: 226 atgattcaagaaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 atgattcaagaaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgt 1755
Query: 286 tgggctctgcccgcgctggttcaaatcctgctggtgtcgttattttttttcgtttttaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 tgggctctgcccgcgctggttcaaatcctgctggtgtcgttattttttttcgtttttaaa 1695
Query: 346 ttacacggacgaagaagcaagtgccatgtattgattgctgttgctcctactctgcatctg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 ttacacggacgaagaagcaagtgccatgtattgattgctgttgctcctactctgcatctg 1635
Query: 406 ctaaactatggtggtttagtgtatccttattgccttattgagagtatttattgagtatat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 ctaaactatggtggtttagtgtatccttattgccttattgagagtatttattgagtatat 1575
Query: 466 aatatcgaccaggaatttgcagtaccagtcataatttcaaatcctgagcaagtttgatac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 aatatcgaccaggaatttgcagtaccagtcataatttcaaatcctgagcaagtttgatac 1515
Query: 526 cctgngcaacattttgaaccctagcatctaacttgtacccctgttcagctagcttggcca 585
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 cctgggcaacattttgaaccctagcatctaacttgtacccctgttcagctagcttggcca 1455
Query: 586 tctcatcggccatcgatgccagaggaactgtgaaacactcgatgaattcattctcttcca 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 tctcatcggccatcgatgccagaggaactgtgaaacactcgatgaattcattctcttcca 1395
Query: 646 gttctgaaactggattttggttctctgggtacgacatatcaacgattgctgtcaccaaag 705
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1394 gttctgaaactggattttggttctctggtaacgacatatcaacgattgctgtcaccaaag 1335
Query: 706 atagattcgtattagtgaatcctgggtcgttgaaaat-ataggggttgcatgtaagattt 764
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 1334 atagattcgtattagtgaatcctgggtcgttgaaaataataggggttgcatgtaggattt 1275
Query: 765 tacc-acgtatncagtctcttctt 787
|||| |||||| ||||||||||||
Sbjct: 1274 taccaacgtatccagtctcttctt 1251
>3x_Contig1017
Length = 3431
Score = 186 bits (94), Expect = 5e-47
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 236 aaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 295
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 aaattttggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 1869
Query: 296 ccgcgctggttcaaatcctgctggtgtcgttatttttt 333
||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 ccgcgctggttcaaatcctgctggtgtcgttatttttt 1907
>3x_Contig1237
Length = 6632
Score = 103 bits (52), Expect = 6e-22
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 280 atctgttgggctctgcccgcgctggttcaaatcctgctggtgtcgttatttttttt 335
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atctcttgggctctgcccgcgctggttcaaatcctgctggtgtcgttatttttttt 2070
>3x_Contig1622
Length = 13445
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 240 ttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgcccgc 299
||||||| ||||||||| ||||||||||| ||| | ||||||| |||||||||||||||
Sbjct: 4244 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 4303
Query: 300 gctggttcaaatcctgctggtgtcgttattttttt 334
|| ||||| | |||||||| |||||||||||||||
Sbjct: 4304 gcaggttcgagtcctgctgttgtcgttattttttt 4338
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7416
Number of Sequences: 1807
Number of extensions: 7416
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 4
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)