BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZC12FM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1649 0.0
>3x_Contig1781
Length = 20717
Score = 1649 bits (832), Expect = 0.0
Identities = 850/855 (99%), Gaps = 1/855 (0%)
Strand = Plus / Plus
Query: 97 tattattcgaaaagattactgaagagatcaacaacgatctaaattcctcgatgagcgttg 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15720 tattattcgaaaagattactgaagagatcaacaacgatctaaattcctcgatgagcgttg 15779
Query: 157 atgaagttgcctatgggttcttaaaagttgcgaacgagtcaatggctaggccaatccgta 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15780 atgaagttgcctatgggttcttaaaagttgcgaacgagtcaatggctaggccaatccgta 15839
Query: 217 ctttgacctatgctaaaggacatgtgatttcgcagcatcgtcttatttcctttggtgggg 276
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15840 ctttgaccgaggctaaaggacatgtgatttcgcagcatcgtcttatttcctttggtgggg 15899
Query: 277 ctggtggtcaacatgccgtatccatcgctgaaacattaggaattgatacagttttgattc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15900 ctggtggtcaacatgccgtatccatcgctgaaacattaggaattgatacagttttgattc 15959
Query: 337 atcgttattcttccattctttctgcgtatggcatgttccttgcggatgtggttgaagagt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15960 atcgttattcttccattctttctgcgtatggcatgttccttgcggatgtggttgaagagt 16019
Query: 397 ctagagagccttgttcttacgtgctagatgaaagtaatcgcgaaacaaatgcgttgattg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16020 ctagagagccttgttcttacgtgctagatgaaagtaatcgcgaaacaaatgcgttgattg 16079
Query: 457 aggataaattcaataggctcacatccaaatgtattgacacgctaaagcaacaaggcttca 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16080 aggataaattcaataggctcacatccaaatgtattgacacgctaaagcaacaaggcttca 16139
Query: 517 acactgagactatcagattggagaaatatttgaacttgagatatgagggtacagaaaccg 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16140 acactgagactatcagattggagaaatatttgaacttgagatatgagggtacagaaaccg 16199
Query: 577 ctttaatggtcttagaatcgggagatacaagctacacaaaccaattccatgaactacata 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16200 ctttaatggtcttagaatcgggagatacaagctacacaaaccaattccatgaactacata 16259
Query: 637 aaaaggagtttggattcaagtttgaggataaatcgatcatagtggatgatgtgcgagtaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16260 aaaaggagtttggattcaagtttgaggataaatcgatcatagtggatgatgtgcgagtaa 16319
Query: 697 gggccactggtgtatccaacgtaagagaagaagagtacattgattctcaactacagagat 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16320 gggccactggtgtatccaacgtaagagaagaagagtacattgattctcaactacagagat 16379
Query: 757 tggtagcaaaggctgctcctgaacctttattcangaaacctgttatgttcggtgaagggt 816
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16380 tggtagcaaaggctgctcctgaacctttattcaggaaacctgttatgttcggtgaagggt 16439
Query: 817 gggttgagactcctatgtacaaattggatgatttggagatcggcactaaaatacaaggac 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16440 gggttgagactcctatgtacaaattggatgatttggagatcggcactaaaatacaaggac 16499
Query: 877 ctgccatcatagctgatggtacccaaactaacttattgacaccaaactcaacgggctacg 936
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 16500 ctgccatcatagctgatggtacccaaactaacttattgacaccaaactcaac-ggctacg 16558
Query: 937 atttttaaatcacat 951
||||| |||||||||
Sbjct: 16559 attttaaaatcacat 16573
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5721
Number of Sequences: 1807
Number of extensions: 5721
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)