BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD01FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1657 0.0
3x_Contig1557 155 2e-37
3x_Contig1518 153 8e-37
3x_Contig1428 151 3e-36
3x_Contig1446 149 1e-35
3x_Contig1374 149 1e-35
3x_Contig1521 145 2e-34
3x_Contig1741 113 7e-25
3x_Contig1272 111 3e-24
>3x_Contig1663
Length = 13533
Score = 1657 bits (836), Expect = 0.0
Identities = 855/860 (99%), Gaps = 1/860 (0%)
Strand = Plus / Plus
Query: 88 tattttttacttgacattgcatattcagtattcaaagttcacgttctgttgtaactttta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tattttttacttgacattgcatattcagtattcaaagttcacgttctgttgtaactttta 632
Query: 148 aaaagtcgccatgacaaaaaaacccacgcactttccatacacagacttttgataaacatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaaagtcgccatgacaaaaaaacccacgcactttccatacacagacttttgataaacatt 692
Query: 208 tcataagtctttttatggagaataaaaggagtaattgctaaacagttgaatcatgtgctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcataagtctttttatggagaataaaaggagtaattgctaaacagttgaatcatgtgctc 752
Query: 268 cacatagaattcaatccaaaccgatgatacagttcagtattacattagtatgaccatgtc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cacatagaattcaatccaaaccgatgatacagttcagtattacattagtatgaccatgtc 812
Query: 328 acgggaacataaagtttgaaaaaacaactttttcatcaatatcatccgatatagtgtaac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 acgggaacataaagtttgaaaaaacaactttttcatcaatatcatccgatatagtgtaac 872
Query: 388 ggctatcacatcacgctttcaccgtggagaccggggttcgactccccgtatcggagtatt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ggctatcacatcacgctttcaccgtggagaccggggttcgactccccgtatcggagtatt 932
Query: 448 attttttgtattttcttattacccagtggaaagttaatgttcgactgtgaatataattgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 attttttgtattttcttattacccagtggaaagttaatgttcgactgtgaatataattgc 992
Query: 508 aattcgacatcaacgtcgaaaatgcatacattcttttgattaatacttacggaagctaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 aattcgacatcaacgtcgaaaatgcatacattcttttgattaatacttacggaagctaaa 1052
Query: 568 tacagattggaatattttttagctcttaaataccaaaattaccacttcttatgtcttcgt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 tacagattggaatattttttagctcttaaataccaaaattaccacttcttatgtcttcgt 1112
Query: 628 ataacttcttcctattcgtttgtttatccatattgccactatgtagcttatttgtcaccg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 ataacttcttcctattcgtttgtttatccatattgccactatgtagcttatttgtcaccg 1172
Query: 688 gtccttgaggtataaatcctggctggggtggaactggggactgatgctgattgtacctac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 gtccttgaggtataaatcctggctggggtggaactggggactgatgctgattgtacctac 1232
Query: 748 cgccgttgacagggggacgaaattgttgcggctgcataggcggtggtggtgaagagtaag 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1233 cgccgttgacagggggacgaaattgttgcggctgcataggcggtggtggtgaagagtaag 1292
Query: 808 tctgtggtggtgggactgccgaactt-gggcatatcgttgaggtccatatcccacaccat 866
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1293 tctgtggtggtggaactgccgaacttggggcatatcgttgaggtccatatcccacaccat 1352
Query: 867 actgaggattaacagtaccttgttacataccattaggcggttcccgtacaggaaccttgc 926
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1353 actgaggattaacagtaccttgtaacataccattaggcggtccccgtacaggaaccttgc 1412
Query: 927 cttgttgcatatgttgatgc 946
||||| ||||||||||||||
Sbjct: 1413 cttgtggcatatgttgatgc 1432
>3x_Contig1557
Length = 10562
Score = 155 bits (78), Expect = 2e-37
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 371 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2541 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 2600
Query: 431 ccccgtatcggagtattatttt 452
||||||||||||||||| ||||
Sbjct: 2601 ccccgtatcggagtattttttt 2622
>3x_Contig1518
Length = 11021
Score = 153 bits (77), Expect = 8e-37
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 371 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5818 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 5759
Query: 431 ccccgtatcggagtatt 447
|||||||||||||||||
Sbjct: 5758 ccccgtatcggagtatt 5742
>3x_Contig1428
Length = 9146
Score = 151 bits (76), Expect = 3e-36
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 371 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6455 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 6396
Query: 431 ccccgtatcggagtat 446
||||||||||||||||
Sbjct: 6395 ccccgtatcggagtat 6380
>3x_Contig1446
Length = 10598
Score = 149 bits (75), Expect = 1e-35
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 371 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3305 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 3246
Query: 431 ccccgtatcggagtattattttt 453
|||||||||||||| || |||||
Sbjct: 3245 ccccgtatcggagtgtttttttt 3223
>3x_Contig1374
Length = 8985
Score = 149 bits (75), Expect = 1e-35
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 371 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8891 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 8832
Query: 431 ccccgtatcggagtattattttt 453
|||||||||||||| || |||||
Sbjct: 8831 ccccgtatcggagttttcttttt 8809
>3x_Contig1521
Length = 8057
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 372 tccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgactc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4296 tccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgactc 4237
Query: 432 cccgtatcggagt 444
|||||||||||||
Sbjct: 4236 cccgtatcggagt 4224
>3x_Contig1741
Length = 21706
Score = 113 bits (57), Expect = 7e-25
Identities = 69/73 (94%)
Strand = Plus / Minus
Query: 371 atccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgact 430
||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||
Sbjct: 9345 atccgatatagtgtaacggctatcacaccacgctctcaccgtggagacccgggttcgact 9286
Query: 431 ccccgtatcggag 443
||| |||||||||
Sbjct: 9285 cccggtatcggag 9273
>3x_Contig1272
Length = 8315
Score = 111 bits (56), Expect = 3e-24
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 372 tccgatatagtgtaacggctatcacatcacgctttcaccgtggagaccggggttcgactc 431
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||
Sbjct: 5215 tccgatatagtgtaacggctatcacaccacgctctcaccgtggagacccgggttcgactc 5156
Query: 432 cccgtatcggag 443
|| |||||||||
Sbjct: 5155 ccggtatcggag 5144
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5904
Number of Sequences: 1807
Number of extensions: 5904
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 9
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)