BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD01RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1544 0.0
>3x_Contig1786
Length = 33838
Score = 1544 bits (779), Expect = 0.0
Identities = 887/911 (97%), Gaps = 10/911 (1%)
Strand = Plus / Minus
Query: 44 gctttgctctgactctgcc-cagctcgcttcgtcttttcatagcttctagaatcttgcaa 102
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5537 gctttgctctgactctgccacagctcgcttcgtcttttcatagcttctagaatcttgcaa 5478
Query: 103 aggctctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5477 aggctctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacct 5418
Query: 163 gggcaaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgttctta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5417 gggcaaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgtcctta 5358
Query: 223 gttgatggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttagg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357 gttgatggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttagg 5298
Query: 283 gagaggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataactt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5297 gagaggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataactt 5238
Query: 343 atgagttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5237 atgagttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttag 5178
Query: 403 tcatgcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgtttt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5177 tcatgcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgtttt 5118
Query: 463 ctttttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccattt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5117 ctttttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccattt 5058
Query: 523 aaccaaataaaggttttgatgatcagctttatgcgaaaaaacctttgaatgaccacaaac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5057 aaccaaataaaggttttgatgatcagctttatgcgaaaaaacctttgaatgaccacaaac 4998
Query: 583 aagggaagcagaataaaacggagtagtcagaacagaccgtgcacttagtttccggttagg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4997 aagggaagcagaataaaacggagtagtcagaacagaccgtgcacttagtttccggttagg 4938
Query: 643 gtaatcacaagatagggatactgggtaatgcagacagagacctttcgtattattattagt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4937 gtaatcacaagatagggatactgggtaatgcagacagagacctttcgtattattattagt 4878
Query: 703 ggcagtaagtagagaaacggcngaacacacagagagagagatacagagaaagagatatac 762
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4877 ggcagtaagtagagaaacggcagaacacacagagagagagatacagagaaagagatatac 4818
Query: 763 tagatagatctgggaatggantaattc-atagcccatgggacctatgcgcntaaac-agt 820
|||||||||||||||||||| |||||| ||||||||||| |||||||||| |||| |||
Sbjct: 4817 tagatagatctgggaatgga-taattcaatagcccatggaacctatgcgctaaaacaagt 4759
Query: 821 gattgttcgcggggcttatggntgtgtgtacagagcagtgaaaaga-gcacgaataaa-c 878
||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |
Sbjct: 4758 gattggtcgcggggcttatggtgttgtgtacagagcagtgaaaagaggcacgaataaacc 4699
Query: 879 atgtgcgatt-aacagatcgagtttgagaattana-cgagttgaacg-acttatgcttg- 934
|||||||||| |||||||||||||||| || | | ||||||||||| || ||||||||
Sbjct: 4698 atgtgcgattaaacagatcgagtttgaagatgagagcgagttgaacgaacatatgcttga 4639
Query: 935 aattgacttat 945
|||||||||||
Sbjct: 4638 aattgacttat 4628
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6061
Number of Sequences: 1807
Number of extensions: 6061
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)