BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD03FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1063 1606 0.0
>3x_Contig1063
Length = 5012
Score = 1606 bits (810), Expect = 0.0
Identities = 852/862 (98%), Gaps = 3/862 (0%)
Strand = Plus / Minus
Query: 86 ttgatttataattgaaattgtttacaattcgtgataacgggtcatctgaagaacagtctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3467 ttgatttataattgaaattgtttacaattcgtgataacgggtcatctgaagaacagtctt 3408
Query: 146 tcggtttacttagctttatggcggattgaggataatcgaccggaatgttgaaaacacatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3407 tcggtttacttagctttatggcggattgaggataatcgaccggaatgttgaaaacacatt 3348
Query: 206 tcactttcttttgattctgatcttgatcagtggtaataaacgttagcgagtaggtcgtga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3347 tcactttcttttgattctgatcttgatcagtggtaataaacgttagcgagtaggtcgtga 3288
Query: 266 catattgtcctttccttaacattacaatatctgacccagccaaatggcacaattggtcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3287 catattgtcctttccttaacattacaatatctgacccagccaaatggcacaattggtcaa 3228
Query: 326 tttcggcttttctttgcaacttcaaggcatttctcaatttgaattttttctctgcatttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3227 tttcggcttttctttgcaacttcaaggcatttctcaatttgaattttttctctgcatttt 3168
Query: 386 cattatgggatgatttggcggtaatttcaagactggttgccttctctgcaggtactgatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3167 cattatgggatgatttggcggtaatttcaagactggttgccttctctgcaggtactgatt 3108
Query: 446 tttctgcctttgaccgtctccctctcttcctcctataactatgtccagcattttttctct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3107 tttctgcctttgaccgtctccctctcttcctcctataactatgtccagcattttttctct 3048
Query: 506 tgtcagcttcactctctttcgtatgtttaattacgccattctcaacttttcctgcagctt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3047 tgtcagcttcactctctttcgtatgtttaattacgccattctcaacttttcctgcagctt 2988
Query: 566 tcgcagacatgatggtaacccgattgcttggcctgatatttagaatctctcaaaataata 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2987 tcgcagacatgatggtaacccgattgcttggcctgatatttagaatctctcaaaataata 2928
Query: 626 tctaccgagcagagtacgctgaaacggttgagataccaatggttatatagcttaagttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2927 tctaccgagcagagtacgctgaaacggttgagataccaatggttatatagcttaagttct 2868
Query: 686 ttttcatagctccctcattctctataaactgatctcatctcatatttcattaacttacca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2867 ttttcatagctccctcattctctataaactgatctcatctcatatttcattaacttacca 2808
Query: 746 tgtctactgcctaaatgcataaagtttcagttttttttcacaaaattggtacctgattgt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2807 tgtctactgcctaaatgcataaagtttcagttttttttcacaaaattggtacctgattgt 2748
Query: 806 tgtagaaaaaacgtgaccagagttgcgacactgcctcaatgaataccgactcattcctgg 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2747 tgtagaaaaaacgtgaccagagttgcgacactgcctcaatgaataccgactcattcctga 2688
Query: 866 aggcatcggaataagaaacatatagtcattggcggttcaatttcttggagattttgaaag 925
|||||||| | ||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 2687 aggcatcgaataaagaaacatatagtcattggcgg-tcaatttc-tggaga-tttgaaag 2631
Query: 926 ggaatccattctatcaaacttg 947
|||| || |||||||||||||
Sbjct: 2630 tgaattcaatctatcaaacttg 2609
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8021
Number of Sequences: 1807
Number of extensions: 8021
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)