BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZD03RM1.SCF screened BAC_end
         (982 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1423                                                        1703   0.0  

>3x_Contig1423 
          Length = 8454

 Score = 1703 bits (859), Expect = 0.0
 Identities = 917/934 (98%), Gaps = 2/934 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 5570

                                                                        
Query: 108  aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 5630

                                                                        
Query: 168  atgttttctctgaaacaataatatattgttgacattttaccaattgttccttttttcttc 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 5631 atgttttctctgaaacaataatatattgttgacattttaccaattgttcctcttctcttc 5690

                                                                        
Query: 228  acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 5750

                                                                        
Query: 288  atcataataaatgatcaatatacgtgacaaactaactaaggg-aaactatatgactgtcc 346
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5751 atcataataaatgatcaatatacgtgacaaactaactaaggggaaactatatgactgtcc 5810

                                                                        
Query: 347  tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 5870

                                                                        
Query: 407  gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 5930

                                                                        
Query: 467  gccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacagtagt 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5931 gccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacagtagt 5990

                                                                        
Query: 527  ctttcttccggttgaccttttttttttattactttacagtatttttttaccttttaagac 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5991 ctttcttccggttgaccttttttttttattactttacagtatttttttaccttttaagac 6050

                                                                        
Query: 587  tttttttttttttaataattaatagatataacactataataataattcaaataaaacagt 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6051 tttttttttttttaataattaatagatataacactataataataattcaaataaaacagt 6110

                                                                        
Query: 647  taaggatatcaccattaaatagagcggagtagattggaatgttaactcatcatcatagca 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6111 taaggatatcaccattaaatagagcggagtagattggaatgttaactcatcatcatagca 6170

                                                                        
Query: 707  tcgccatctacttcttgtccagcatgaactgactgtacgttagattctggtacagcaaat 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6171 tcgccatctacttcttgtccagcatgaactgactgtacgttagattctggtacagcaaat 6230

                                                                        
Query: 767  ggtctctcgttactcgaggaatttccactttcaatcagctgcggattgaaccanataccg 826
            |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 6231 ggtctctcgttactcgaggaatttccacttccaatcagctgcggattgaaccaaataccg 6290

                                                                        
Query: 827  ttggtggtttctgtatcaggcttttttggcttttcaggcaatacccttttttggagatgc 886
            |||||| |||||||||||||||||||||||||||||||||||||||||| | |  |||||
Sbjct: 6291 ttggtgttttctgtatcaggcttttttggcttttcaggcaataccctttctggaggatgc 6350

                                                                        
Query: 887  ttgaataaacatccggtatgttttacattcagccccgtacctacaaggttcattgatagg 946
            | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 6351 tggaataaacatcc-gtatgttctacattcagccccgtacctacaaggttcattgatagg 6409

                                              
Query: 947  gtgacccgaaaggcaatctattcttgtacattgc 980
            ||||||  | ||||| ||||||||||||||||||
Sbjct: 6410 gtgaccgaagaggcagtctattcttgtacattgc 6443


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,048
Number of Sequences: 1807
Number of extensions: 17048
Number of successful extensions: 190
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)