BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD04FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1707 1564 0.0
>3x_Contig1707
Length = 16216
Score = 1564 bits (789), Expect = 0.0
Identities = 839/848 (98%), Gaps = 7/848 (0%)
Strand = Plus / Plus
Query: 86 cgaacatgtccatgtatgaacattgtcctattcacgtgatatatattttgtaccctttca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4387 cgaacatgtccatgtatgaacattgtcctattcacgtgatatatattttgtaccctttca 4446
Query: 146 acaataatctacgaaaaaaccaataatttgaaaaatatcaagatgcagacaagacaaaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4447 acaataatctacgaaaaaaccaataatttgaaaaatatcaagatgcagacaagacaaaac 4506
Query: 206 acatatggatgaagaaaactcatccactcaacctcattgtactttttttctccagtttgc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507 acatatggatgaagaaaactcatccactcaacctcattgtactttttttctccagtttgc 4566
Query: 266 attgtagaagcagtgaaattgatcaattgtcaaggatccctagtcgtcttccttaagaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4567 attgtagaagcagtgaaattgatcaattgtcaaggatccctagtcgtcttccttaagaca 4626
Query: 326 tgcctcccggggaacttatattttctaacctaaggtcaggatcaaggcctgttccaaggg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4627 tgcctcccggggaacttatattttctaacctaaggtcaggatcaaggcctgttccaaggg 4686
Query: 386 acagggatgccctgtcatcagtgcaaagcgatgccatcagcaccaaatcttctgcaaggt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4687 acagggatgccctgtcatcagtgcaaagcgatgccatcagcaccaaatcttctgcaaggt 4746
Query: 446 ataactttcaaggtaccggttcatctgatgcaacttctggtacgaatgttacaattagaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4747 ataactttcaaggtaccggttcatctgatgcaacttctggtacgaatgttacaattagaa 4806
Query: 506 ataatactttgagtatcggcgtcagctctcaaatgcaaggatctgcgttcaacggccctc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4807 ataatactttgagtatcggcgtcagctctcaaatgcaaggatctgcgttcaacggccctc 4866
Query: 566 ggatgcagttatcgaccaatggtttgaaaaatactcaatctaaagccctgcaggcgcaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4867 ggatgcagttatcgaccaatggtttgaaaaatactcaatctaaagccctgcaggcgcaat 4926
Query: 626 cacaagatggttgtcaggatagtaagaatattgcggataatgatagtgacgcagaagcga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4927 cacaagatggttgtcaggatagtaagaatattgcggataatgatagtgacgcagaagcga 4986
Query: 686 gaacagctaaaagatccctcgagttggaacttgcttttcatgaagcaaggttttcgaatg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4987 gaacagctaaaagatccctcgagttggaacttgcttttcatgaagcaaggttttcgaatg 5046
Query: 746 aacaagttatggttgacatatcatccattaagggtgccaaagaaggtgatctggctgaac 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5047 aacaagttatggttgacatatcatccattaagggtgccaaagaaggtgatctggctgaac 5106
Query: 806 taaaaac-tacagaacttctcccggatccaaagataaaaag-tatatttcatagtggaaa 863
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 5107 taaaaacttacagaacttctcccggatccaaagataaaaagttatatttcatagt-gaaa 5165
Query: 864 ga-tttgatacagaaacaagaa-gagattggagagtttc--aaattcagttttatctggg 919
|| ||||||||||||||||||| ||||||| |||||||| || ||||||||||||||||
Sbjct: 5166 gattttgatacagaaacaagaaggagattgaagagtttccaaatttcagttttatctggg 5225
Query: 920 caactaca 927
||||||||
Sbjct: 5226 caactaca 5233
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7272
Number of Sequences: 1807
Number of extensions: 7272
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)