BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD04RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig875 1590 0.0
>3x_Contig875
Length = 2795
Score = 1590 bits (802), Expect = 0.0
Identities = 857/876 (97%), Gaps = 1/876 (0%)
Strand = Plus / Plus
Query: 75 agtcgctggtctgcagtgtgtctgacttctagttttaataatatgcaatggatcattttt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcgctggtctgcagtgtgtctgacttctagttttaataatatgcaatggatcattttt 60
Query: 135 ttttgttagcttcttagcggtaggaagctgcactgacaatgacatcttaccgagagctct 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttgttagcttcttagcggtaggaagctgcactgacaatgacatcttaccgagagctct 120
Query: 195 tgtgcgacccggaaaaaccttagagataataaaggacagttcagtacttttagagacgct 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtgcgacccggaaaaaccttagagataataaaggacagttcagtacttttagagacgct 180
Query: 255 accaaaaattttaagcggacgactaatacttagtattaccgcttctgctcttgtgtgtcc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accaaaaattttaagcggacgactaatacttagtattaccgcttctgctcttgtgtgtcc 240
Query: 315 caccttatatatatagagagccgttactatgagaatagtcctgtgatttctttatctcat 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caccttatatatatagagagccgttactatgagaatagtcctgtgatttctttatctcat 300
Query: 375 cgcagtagtcgattaaatgtcagactttgaattttgttgattttttaatcagaactaccg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgcagtagtcgattaaatgtcagactttgaattttgttgattttttaatcagaactaccg 360
Query: 435 aattaggtatttacaagcgatatattagaataatgttacatagataatatatacaatgaa 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattaggtatttacaagcgatatattagaataatgttacatagataatatatacaatgaa 420
Query: 495 aaatgtatataagtcaaactgtggggtcaagggggtaaggatggataaggcattttcaaa 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaatgtatataagtcaaactgtggggtcaagggggtaaggatggataaggcattttcaaa 480
Query: 555 aaatatataccattctaagaagacaggcgtgtttaccgtttgaaaataaacggccttgtt 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaatatataccattctaagaagacaggcgtgtttaccgtttgaaaataaacggccttgtt 540
Query: 615 ttccaagatgcaccctgatagaatgcggaataagactcgttcataaatgtatggatagta 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttccaagatgcaccctgatagaatgcggaataagactcgttcataaatgtatggatagta 600
Query: 675 aatcgttagatgagaaaggtttgttacatgtangacattttctcatcctagcagctaatc 734
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 601 aatcgttagatgagaaaggtttgttacatgtaggacattttctcatcctagcagctaatc 660
Query: 735 tttctttgcagcaaacatcgcaaaacacatgaccgcaagtctttgaggcagtattcttnc 794
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 661 tttctttgcagcaaacatcgcaaaacacatgaccgcaagtcttgagggcagtattcttcc 720
Query: 795 atttttggnaacat-atgaacagtagattatagtacgggaattctcttactcttcggcta 853
| |||| | ||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 721 aatttttggaacataatgaacagtagattatagtacggaaattctctaactcttcggcta 780
Query: 854 gagcaccattgtcaccaccattagagaggatgggcttgnataanttctttgacttggctt 913
|||||||||||||||||||||||||||| | | |||| |||| ||||||||||||||||
Sbjct: 781 gagcaccattgtcaccaccattagagagtaatgtcttgtataatttctttgacttggctt 840
Query: 914 cagcactggaaaacttgatcttcagctgcttgnttt 949
|||||||||||| ||||||||||||||||||| |||
Sbjct: 841 cagcactggaaaccttgatcttcagctgcttgtttt 876
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7232
Number of Sequences: 1807
Number of extensions: 7232
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)