BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZD06FM1.SCF screened BAC_end
         (976 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1575                                                        1574   0.0  

>3x_Contig1575 
          Length = 11952

 Score = 1574 bits (794), Expect = 0.0
 Identities = 865/880 (98%), Gaps = 8/880 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   tgaaatccaaccaccaacaaatttctcacggctataatgaatttttttcccttttcagtg 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4972 tgaaatccaaccaccaacaaatttctcacggctataatgaatttttttcccttttcagtg 5031

                                                                        
Query: 147  ttaggaaaatcccaacagactaataaagacaactcccaactacggatatttcagtgaaag 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5032 ttaggaaaatcccaacagactaataaagacaactcccaactacggatatttcagtgaaag 5091

                                                                        
Query: 207  ttgcaggggaccaaaagaaaaaacagcattccatcatgtgcaagaataacgaacgttgag 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5092 ttgcaggggaccaaaagaaaaaacagcattccatcatgtgcaagaataacgaacgttgag 5151

                                                                        
Query: 267  aaaagtggtcatggcggcaaatatgaaaggacaggaagtccaattaaataggaatcagaa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5152 aaaagtggtcatggcggcaaatatgaaaggacaggaagtccaattaaataggaatcagaa 5211

                                                                        
Query: 327  tatataaagcgatacatataagagacagaagggtaaattgtgtaaactgaagtcgccaag 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5212 tatataaagcgatacatataagagacagaagggtaaattgtgtaaactgaagtcgccaag 5271

                                                                        
Query: 387  acactgaccatttctaagtattgtcgctggtcaaaccaaaccaaaactttcccaaactag 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5272 acactgaccatttctaagtattgtcgctggtcaaaccaaaccaaaactttcccaaactag 5331

                                                                        
Query: 447  ctagttagaactcagataagtatgtgtcaacaaactaccagtatcttttgaagcaggact 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5332 ctagttagaactcagataagtatgtgtcaacaaactaccagtatcttttgaagcaggact 5391

                                                                        
Query: 507  tcagaaaagagagtaccaactcacagttgtatgaagaatcgaaagggaatttattgccac 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5392 tcagaaaagagagtaccaactcacagttgtatgaagaatcgaaagggaatttattgccac 5451

                                                                        
Query: 567  gtgacaggaattaagagaccgccttccctaagaaaccctctaactttgcctcctttccaa 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5452 gtgacaggaattaagagaccgccttccctaagaaaccctctaactttgcctcctttccaa 5511

                                                                        
Query: 627  tctgattgatcgtttctatcaaacttatctacgaggtttacaatatagcttagatggcat 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5512 tctgattgatcgtttctatcaaacttatctacgaggtttacaatatagcttagatggcat 5571

                                                                        
Query: 687  tatttcttgctgtttctctatatttcatggaattcgtcttttagccgncaattccatcta 746
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5572 tatttcttgctgtttctctatatttcatggaattcgtcttttagccgccaattccatcta 5631

                                                                        
Query: 747  aattgaaggatatggcagatttaccctaccctcttttctgtgggacttgaatatgatttt 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5632 aattgaaggatatggcagatttaccctaccctcttttctgtgggacttgaatatgatttt 5691

                                                                        
Query: 807  ttcctttgaaaag-atcagttggttagggtataacatt--aaaaaaaaataatggaactt 863
            || |||||||||| ||||||||||||||||| ||||||  ||||||||| ||||||||||
Sbjct: 5692 tt-ctttgaaaagaatcagttggttagggtaaaacattaaaaaaaaaaaaaatggaactt 5750

                                                                        
Query: 864  tttcagtatggcaaaatatgcctacgc-aagtatagagtat-atttttggtggatttggg 921
            ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||
Sbjct: 5751 tttcagtatggcaaaatatgcctacgcaaagtatagagtataatttttgttggattttgg 5810

                                                    
Query: 922  cctct-ttcttatattctgaaatcttc-actttttttttt 959
            ||||| | || |||||||||||||||| ||||||||||||
Sbjct: 5811 cctctatgctaatattctgaaatcttcaactttttttttt 5850


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9945
Number of Sequences: 1807
Number of extensions: 9945
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)