BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD06RM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1679 0.0
>3x_Contig1777
Length = 26319
Score = 1679 bits (847), Expect = 0.0
Identities = 923/939 (98%), Gaps = 7/939 (0%)
Strand = Plus / Plus
Query: 43 gcttagctcctgacgaaactttaacttttccagcgtatctgtcgttaatgagcgaatgta 102
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2579 gcttagctcctgacgaaactttaacatttccagcgtatctgtcgttaatgagcgaatgta 2638
Query: 103 tgggtgaaatgccagacccaaccgagatcagagaagcacttaaggcattctcagataatg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2639 tgggtgaaatgccagacccaaccgagatcagagaagcacttaaggcattctcagataatg 2698
Query: 163 aagagctcttgtgtgactctgctgagcttgaacaatgtctaaaggacgtcggattgttag 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2699 aagagctcttgtgtgactctgctgagcttgaacaatgtctaaaggacgtcggattggaag 2758
Query: 223 accctgcgaaactggatcgtgtattggcacacttttctgcgaaacaagtatctggccgaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2759 accctgcgaaactggatcgtgtattggcacacttttctgcgaaacaagtatctggccgaa 2818
Query: 283 gagtatttaagggagaaaagttcgttcaatctatcagtgaatgattcgcagtggatatat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2819 gagtatttaagggagaaaagttcgttcaatctatcagtgaatgattcgcagtggatatat 2878
Query: 343 ctaaatttacagtgtcttttcatatataatatacacatatattactattaatatttctgg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2879 ctaaatttacagtgtcttttcatatataatatacacatatattactattaatatttctgg 2938
Query: 403 ggttttctattttaaagatgcctatggtatgctctctacaagtccacgataagttcttca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2939 ggttttctattttaaagatgcctatggtatgctctctacaagtccacgataagttcttca 2998
Query: 463 accgaccaatcttcgaacgatccatcaggaagatatcttctgatgaccaatggtatcttc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 accgaccaatcttcgaacgatccatcaggaagatatcttctgatgaccaatggtatcttc 3058
Query: 523 ttctctgctaattctttcatagcgattctcaatgggtcggtttcaccttccaagtcaacg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 ttctctgctaattctttcatagcgattctcaatgggtcggtttcaccttccaagtcaacg 3118
Query: 583 aacactggtgcgttcatagatatttgcaaggctctggtacctaaaattctggctctttcg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 aacactggtgcgttcatagatatttgcaaggctctggtacctaaaattctggctctttcg 3178
Query: 643 tactttgtcatgtatggtgttgtagttctatcttccttggcgatagccttctccttcaaa 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 tactttgtcatgtatggtgttgtagttctatcttccttggcgatagccttctccttcaaa 3238
Query: 703 gttcttctccgacgagcctcctgttgctggaactcttctggaccaaatcctccagcaact 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3239 gttcttctccgacgagcctcctgttgctggaactcttctggaccaaatcctccagcaact 3298
Query: 763 atcgtgttcccgttttcatctgtgcctaatccgttctcatcgccaaacttaccctcgccc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 atcgtgttcccgttttcatctgtgcctaatccgttctcatcgccaaacttaccctcgccc 3358
Query: 823 tcatcaaattcgtcgtaatcttgag-aatgctcttggtcaaaatcttcatagttctctgg 881
||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 3359 tcatcaaatccgtcgtaatc-tgagaaatgctcttggtcaaaatcttcatagttctctgg 3417
Query: 882 cacgtccataaatctgtattagattagtttgtgcttggattgacatttcagc-acgcata 940
|||| ||||||||||||||| ||||||||||||| ||||||| |||||| |||||||
Sbjct: 3418 accgtcattaaatctgtattaga-tagtttgtgcttgaattgaca-ttcagcaacgcata 3475
Query: 941 ctcatcttagttagt-aaactattcatgaagacaacttc 978
|||||| |||||||| |||||||||||||||||||||||
Sbjct: 3476 ctcatc-tagttagtaaaactattcatgaagacaacttc 3513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6789
Number of Sequences: 1807
Number of extensions: 6789
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)