BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZD07RM1.SCF screened BAC_end
         (954 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1100                                                        1643   0.0  

>3x_Contig1100 
          Length = 4703

 Score = 1643 bits (829), Expect = 0.0
 Identities = 867/877 (98%), Gaps = 3/877 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   gcttagtctccaaagtttgtttcaattctcgaggatcaacataatcatactcaactccgt 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2973 gcttagtctccaaagtttgtttcaattctcgaggatcaacataatcatactcaactccgt 3032

                                                                        
Query: 105  aagcaggctgcaatatctttacattttctagcccaggaatcattctcatcataatttcct 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3033 aagcaggctgcaatatctttacattttctagcccaggaatcattctcatcataatttcct 3092

                                                                        
Query: 165  gaacatcctcaggcattgaattcgatattccatttggatatatgacgtctgtatttaacc 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3093 gaacatcctcaggcattgaattcgatattccatttggatatatgacgtctgtatttaacc 3152

                                                                        
Query: 225  cttcaggctccaaccatattctgtgcgaatctttgtcactaaatctgataattttagctt 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 cttcaggctccaaccatattctgtgcgaatctttgtcactaaatctgataattttagctt 3212

                                                                        
Query: 285  ctaaggacggacaatatcgaggacctttgacagtttctctaatatgaatagattgatgca 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 ctaaggacggacaatatcgaggacctttgacagtttctctaatatgaatagattgatgca 3272

                                                                        
Query: 345  aattaagctttaaataatcatgcaattcggaagtagtgcgtgtaccataacataaaattt 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3273 aattaagctttaaataatcatgcaattcggaagtagtgcgtgtaccataacataaaattt 3332

                                                                        
Query: 405  ggtctttgatactcacttcattattcatgtatgacattggatacggggggtcatcaccgt 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3333 ggtctttgatactcacttcattattcatgtatgacattggatacggggggtcatcaccgt 3392

                                                                        
Query: 465  attgtttttcaagattcgtaaaatcaatggttctaccatcaagtcttgccggagtaccag 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3393 attgtttttcaagattcgtaaaatcaatggttctaccatcaagtcttgccggagtaccag 3452

                                                                        
Query: 525  tctttaatctacccaacttaaatccagcagctttcaacgtatgacttattccataggtag 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3453 tctttaatctacccaacttaaatccagcagctttcaacgtatgacttattccataggtag 3512

                                                                        
Query: 585  gtgcttcaccaattcttccggcaggaatggttttcaaaccaatatgaatttctgcactta 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3513 gtgcttcaccaattcttccggcaggaatggttttcaaaccaatatgaatttctgcactta 3572

                                                                        
Query: 645  gaaatgtaccagttgaaatgacaactttggaacatttgataacctcatcattatctagaa 704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3573 gaaatgtaccagttgaaatgacaactttggaacatttgataacctcatcattatctagaa 3632

                                                                        
Query: 705  ccacccctcgcacatcgccaaaatttctattatttacatcattggcaaaagacactttca 764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3633 ccacccctcgcacatcgccaaaatttctattatttacatcattggcaaaagacactttca 3692

                                                                        
Query: 765  gtgtgtggtctattataacgtccttcactttgccggnagatagagntagggtttggataa 824
            ||||||||||||||||||||||||||||||||||||   |||||| || |||||||||||
Sbjct: 3693 gtgtgtggtctattataacgtccttcactttgccggagaatagagtta-ggtttggataa 3751

                                                                        
Query: 825  ttntgtagtgcgttttgcattnccttcaaatat-actctcggtcaatctgagcacgagga 883
            || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 3752 ttttgtagtgcgttttgcatttccttcaaatataactctcggtcaatctgagcacgagga 3811

                                                 
Query: 884  cccc-aacagcagcacccctactttgattaaacatct 919
            |||| |||||||||||||||||||||||| |||||||
Sbjct: 3812 ccccaaacagcagcacccctactttgatttaacatct 3848


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6589
Number of Sequences: 1807
Number of extensions: 6589
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)