BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD09FM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig533 1554 0.0
>3x_Contig533
Length = 2268
Score = 1554 bits (784), Expect = 0.0
Identities = 863/879 (98%), Gaps = 8/879 (0%)
Strand = Plus / Plus
Query: 86 cctgctcttctgttttatatttaaaggtaaccttgaaatttgaagcagttacagaaaatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cctgctcttctgttttatatttaaaggtaaccttgaaatttgaagcagttacagaaaatg 593
Query: 146 ttaataacaaatattgcgttcacatacaaactgttactcaaacaaagagagtacaattgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttaataacaaatattgcgttcacatacaaactgttactcaaacaaagagagtacaattgg 653
Query: 206 aacaaattacacttaaaccgccaattaccaatcaataaatcaaattaacatgtcagttca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aacaaattacacttaaaccgccaattaccaatcaataaatcaaattaacatgtcagttca 713
Query: 266 cactccagaagttttatgggctcaacgttcaagcgaatccgatgataccaagaacaattt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cactccagaagttttatgggctcaacgttcaagcgaatccgatgataccaagaacaattt 773
Query: 326 gttcattaccatcaatattccagactgtacgaaccctaaaatggaattaaccgaaaattc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gttcattaccatcaatattccagactgtacgaaccctaaaatggaattaaccgaaaattc 833
Query: 386 tttggaattcagtgcactatctaagtatcacagtaaagatgggatcaaataccatttgca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tttggaattcagtgcactatctaagtatcacagtaaagatgggatcaaataccatttgca 893
Query: 446 cattgacttctacaagccaattgatacggaaaactcggagcagagggtagctaacggtag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 cattgacttctacaagccaattgatacggaaaactcggagcagagggtagctaacggtag 953
Query: 506 aaactactttttggtgttaaggaagaaagatttaggccttgaatactggcccagattgac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 aaactactttttggtgttaaggaagaaagatttaggccttgaatactggcccagattgac 1013
Query: 566 caaggagaagcttaagtatcattacattaaaaccgactttgataaatgggttgacgaaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 caaggagaagcttaagtatcattacattaaaaccgactttgataaatgggttgacgaaga 1073
Query: 626 tgaacaagaagagaatgttgctgctgataacgacttgatgtcacaatttggccaaatggg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 tgaacaagaagagaatgttgctgctgataacgacttgatgtcacaatttggccaaatggg 1133
Query: 686 gggcgctggcttccctggaatggaacaagggttcaatccacaagccttcgctgacgccgg 745
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1134 gggcgctggcttccctggaatggaacaaggtttcaatccacaagccttcgctgacgccgg 1193
Query: 746 aatcaacctggatgaggcattaccagaagaagatgatgaagatgacgaa-aaaaagctga 804
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1194 aatcaacctggatgaggcattaccagaagaagatgatgaagatgacgaagaaaaagctga 1253
Query: 805 at-ggtatgatcggattgtctgcaaaggcgattatctatc-agattgatttcttttattt 862
|| ||||||||||||| |||||||||||||||| |||||| ||||| | ||| |||||||
Sbjct: 1254 ataggtatgatcggatggtctgcaaaggcgatt-tctatcaagatttaattcatttattt 1312
Query: 863 gctgtatacagtcatgcgcatatataggtgtattaatacgaac-aaaattnctatta-at 920
||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| ||
Sbjct: 1313 gctgtatacagtcatgcgcatatataggtgtataaatacgaacaaaaatttctattatat 1372
Query: 921 attatgaat-ttgagcggctttgaat-aaaagctattta 957
|||||| || |||||||||||||||| ||||||||||||
Sbjct: 1373 attatgcatattgagcggctttgaataaaaagctattta 1411
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8670
Number of Sequences: 1807
Number of extensions: 8670
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)