BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD09RM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1409 1661 0.0
>3x_Contig1409
Length = 9404
Score = 1661 bits (838), Expect = 0.0
Identities = 924/945 (97%), Gaps = 6/945 (0%)
Strand = Plus / Minus
Query: 51 gcttttgtaacattaataattaatctttatacacggacaatctgatacgatgtaatacat 110
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3578 gcttttgtaacattaataattaatcagtatacacggacaatctgatacgatgtaatacat 3519
Query: 111 ctagttagaataaggcagaataaggggagttcacagcgtttttattacactttcatttgc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3518 ctagttagaataaggcagaataaggggagttcacagcgtttttattacactttaatttgc 3459
Query: 171 actagcaagaagtacgttaccaggaatggcagacttattatcagcacagggtattgttaa 230
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 3458 actagcaagaagtacgttaccaggaatggcagaattattatcagcacagggtattgcaaa 3399
Query: 231 atcaaaaaaaaggctacacaatccatttgggtagtgtcttccgaatctggtggtgtgaaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398 atcaaaaaaaaggctacacaatccatttgggtagtgtcttccgaatctggtggtgtgaaa 3339
Query: 291 ctggctgtaaaaaatatgattgtagtcattgttggtaaaccccaatcgataacaataacc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3338 ctggctgtaaaaaatatgattgtagtcattgttggtaaaccccaatcgataacaataacc 3279
Query: 351 agcaacaacattgaatcgtcctgccaatttaaccaacctgcttttactagcctatcacac 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3278 agcaacaacattgaatcgtcctgccaatttaaccaacctgcttttactagcctatcacac 3219
Query: 411 catagaaccccaaatatcggcatgatacacaatcttaggaccactaaaattgcagcggat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3218 catagaaccccaaatatcggcatgatacacaatcttaggaccactaaaattgcagcggat 3159
Query: 471 ttccagaatcctggatatagctttttgatcttaagtctgcctaatgttgctcccaaaagc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3158 ttccagaatcctggatatagctttttgatcttaagtctgcctaatgttgctcccaaaagc 3099
Query: 531 atcaatccaaaaggcactgatgcatttcctaagtatcctgtataatccataatgaaattc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3098 atcaatccaaaaggcactgatgcatttcctaagtatcctgtataatccataatgaaattc 3039
Query: 591 agag-ccggctgaccgtctggtgctggatgaatgtacggtccattggaggtagtaacgaa 649
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3038 agagcccggctgaccgtctggtgctggatgaatgtacggtccattggaggtagtaacgaa 2979
Query: 650 cagagccttaagccaaggaatgaatgcaataagtaatgctaggaaaacagccatcgaaca 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2978 cagagccttaagccaaggaatgaatgcaataagtaatgctaggaaaacagccatcgaaca 2919
Query: 710 cggtcttaaaaagttcttgaggaagaaaagcagtacactcataccaggaatatttctgac 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2918 cggtcttaaaaagttcttgaggaagaaaagcagtacactcataccaggaatatttctgac 2859
Query: 770 tctcgagggtaaaatgttagctgattctttgatatcttggccagttacggtagcatctga 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2858 tctcgagggtaaaatgttagctgattctttgatatcttggccagttacggtagcatctga 2799
Query: 830 tgtgacaattctctttcaagttgtgaactcttttcttaaggggaccctgacctg-attct 888
||||||||||||||| |||||||||||||||||| |||| || ||||||||| || ||
Sbjct: 2798 tgtgacaattctcttcaaagttgtgaactcttttc-taagagggacctgacctgaatcct 2740
Query: 889 cggtttcggngtttattggtggatgtaacagaatttctgcgagctccgtattggtctaca 948
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2739 cggtttcgggtttta-tggtggatgtaacagaatttctgcgagctccgtattggtctaca 2681
Query: 949 ttagagtattcttttattaaatcggtgaac-ctttccggaggcat 992
||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 2680 ttagagtattcttttattaaatc-gtgaacattttccggaggcat 2637
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6473
Number of Sequences: 1807
Number of extensions: 6473
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)