BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD11FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1647 0.0
>3x_Contig1769
Length = 25795
Score = 1647 bits (831), Expect = 0.0
Identities = 847/853 (99%)
Strand = Plus / Plus
Query: 89 acttgagtcttttgttgattcatcctacattaaattgttcgtcaccggaggattccagct 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15370 acttgagtcttttgttgattcatcctacattaaattgttcgtcaccggaggattccagct 15429
Query: 149 tagtttccgcacttaagaggcaataaccatgccataattttgggttcctacgaaatattt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15430 tagtttccgcacttaagaggcaataaccatgccataattttgggttcctacgaaatattt 15489
Query: 209 ggaaaaaacttattaaaaaaaaaattcgtaggaaaaaaagtgaaggtctctcatcacccc 268
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15490 ggaaaaaacgtaataaaaaaaaaattcgtaggaaaaaaagtgaaggtctctcatcacccc 15549
Query: 269 gcagaacaggaaaccagcctcttagtgaaacccgcaccgcaaatagatttccatgagatg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15550 gcagaacaggaaaccagcctcttagtgaaacccgcaccgcaaatagatttccatgagatg 15609
Query: 329 gttgttcctttttacctaattaaagtttgagaatgcggtaaacaggggactacacagatt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15610 gttgttcctttttacctaattaaagtttgagaatgcggtaaacaggggactacacagatt 15669
Query: 389 gtaagagagggaaaataattctcagtccaatacatgctccacaaaagccgaatgagaatt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15670 gtaagagagggaaaataattctcagtccaatacatgctccacaaaagccgaatgagaatt 15729
Query: 449 ggtgacgatatatattcattttgtgacaaaataaaggcgctgcagtatgcaaatacgatg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15730 ggtgacgatatatattcattttgtgacaaaataaaggcgctgcagtatgcaaatacgatg 15789
Query: 509 tctgttgcgtaatgtgcgatttcgttatacatgctaatatgatgtatgtttgttttgtat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15790 tctgttgcgtaatgtgcgatttcgttatacatgctaatatgatgtatgtttgttttgtat 15849
Query: 569 tctcgttatcatgccacttctgatttgagggttctagctcactttggatttagttatcat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15850 tctcgttatcatgccacttctgatttgagggttctagctcactttggatttagttatcat 15909
Query: 629 tattaaggtatttagcagttactatttaatgcctgtttatacgtaatacgtgctatatgg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15910 tattaaggtatttagcagttactatttaatgcctgtttatacgtaatacgtgctatatgg 15969
Query: 689 catttattagaaggcatatatatatatatatgtagcagtcgtgactgtttaagattttnc 748
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15970 catttattagaaggcatatatatatatatatgtagcagtcgtgactgtttaagattttcc 16029
Query: 749 ttcgttttattgttgttcgaaccttattacatanggaaacattatattttaatcatatta 808
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16030 ttcgttttattgttgttcgaaccttattacataaggaaacattatattttaatcatatta 16089
Query: 809 cgatattataatattatataacaactgaaaaagtctcgtcaagtcgaacaaagattcatt 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16090 cgatattataatattatataacaactgaaaaagtctcgtcaagtcgaacaaagattcatt 16149
Query: 869 tacaatccaaagtataaaggaatcagaccgcgtcgtatcgttaactgttaatttgcactt 928
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16150 tacaatccaaagtataaaggaatcagaccgcgtcgtatcgttaactgttaatttgcacta 16209
Query: 929 ttagtggaagtaa 941
| |||||||||||
Sbjct: 16210 taagtggaagtaa 16222
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,829
Number of Sequences: 1807
Number of extensions: 11829
Number of successful extensions: 1232
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)