BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD11RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1326 1711 0.0
>3x_Contig1326
Length = 4875
Score = 1711 bits (863), Expect = 0.0
Identities = 897/908 (98%), Gaps = 1/908 (0%)
Strand = Plus / Plus
Query: 44 gctttgtcaaagtattccttgtattggttggcttcacccttgtcagccataatcaaagcc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gctttgtcaaagtattccttgtattggttggcttcacccttgtcagccataatcaaagcc 247
Query: 104 atgtagatgtaagtagaaggtcttgggttcaaagacaacgattcttccaggttaatatgc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atgtagatgtaagtagaaggtcttgggttcaaagacaacgattcttccaggttaatatgc 307
Query: 164 gcggtaattggatcatttttgaagaacttgaaaatacccacatgttcgaaggcttttgca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 308 gcggtaattggatcatttttgaagaacttgaaaatacccacatgttcgaaggcgatggca 367
Query: 224 gccttcttcttcaaagattcattatctggagaagattctaattctttcttgtataactcg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gccttcttcttcaaagattcattatctggagaagattctaattctttcttgtataactcg 427
Query: 284 gcagccttggtgaattcttcatcagccaattcgtaacatccggtttgacatttgtacaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcagccttggtgaattcttcatcagccaattcgtaacatccggtttgacatttgtacaag 487
Query: 344 ttttccaaaccttttttcaactcaacatctgcttcattttcgccatcgtaatcatcgaaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttttccaaaccttttttcaactcaacatctgcttcattttcgccatcgtaatcatcgaaa 547
Query: 404 gaagtttcagggttgaagataccgaagaatgatgccaaagaggtgttagatggtaatgga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaagtttcagggttgaagataccgaagaatgatgccaaagaggtgttagatggtaatgga 607
Query: 464 gattctttaccctggttctccttcaatttttcacccaagacctttgtggcttgtttgttc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gattctttaccctggttctccttcaatttttcacccaagacctttgtggcttgtttgttc 667
Query: 524 atgtttctttccagcagttgctccacggattgaccgctgtattcacccaacaaagagaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atgtttctttccagcagttgctccacggattgaccgctgtattcacccaacaaagagaca 727
Query: 584 gccgacaagtcaaacatagcatcggagaattggcccaagttttcataagcactagctctt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gccgacaagtcaaacatagcatcggagaattggcccaagttttcataagcactagctctt 787
Query: 644 ctcaaccaacatttggagtaatcaggcttcaatttcaaagcggcagtggtatcttcaaca 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctcaaccaacatttggagtaatcaggcttcaatttcaaagcggcagtggtatcttcaaca 847
Query: 704 actttttcgaaattgttaattgagacgtatgcagcagatctgttggagtaaaacactgga 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 actttttcgaaattgttaattgagacgtatgcagcagatctgttggagtaaaacactgga 907
Query: 764 tcctctttc-atgaaatagctaaggtataatattcaatagcnctttcgaaatccttggcc 822
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 908 tcctctttcaatgaaatagctaaggtataatattcaatagccttttcgaaatccttggcc 967
Query: 823 ttaaagaattcattacccttgtcctttcacgccaaagcatatttgtcaacttgttctgga 882
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 968 ttaaagaattcattacccttgtccttcaacgccaaagcatatttgtcaacttgttctgga 1027
Query: 883 gtaaactcatncttcttanacaaatctggttgaccgttagcgtctactggattaacgaca 942
|||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1028 gtaaactcatccttcttagacaaatctggttgaccgttagcgtctactggataaacgaca 1087
Query: 943 tcagaacc 950
||||||||
Sbjct: 1088 tcagaacc 1095
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8409
Number of Sequences: 1807
Number of extensions: 8409
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)