BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD12FM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1439 0.0
>3x_Contig1698
Length = 21001
Score = 1439 bits (726), Expect = 0.0
Identities = 821/846 (97%), Gaps = 5/846 (0%)
Strand = Plus / Plus
Query: 82 aaccatccagttccgacctaaaattagatgcgaattcctagattccagaagggctgtcca 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18413 aaccatccagttccgacctaaaattagatgcgaattcctagattccagaagggctgtcca 18472
Query: 142 tttatcttgagcccagacggcccatgctaatcgccttcgtagtccacgttcccagcgagg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18473 tttatcttgagcccagacggcccatgctaatcgccttcgtagtccacgttcccagcgagg 18532
Query: 202 taatctccagttttttcaatcaacaccgaggccaagttcctctgacaaagcaacaacttc 261
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18533 taatctccagtcttgacaatcaacaccgaggccaagttcctctgacaaagcaacaacttc 18592
Query: 262 cgaacatagtacccaattgttgggacattcactacgacaatgcaaaattagtaaacctgc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18593 cgaacatagtacccaattgttgggacattcactacgacaatgcaaaattagtaaacctgc 18652
Query: 322 ttggacaatgcttaatttgggtctttcaaacacctcgtagaaagtttttaatgcaatatc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18653 ttggacaatgcttaatttgggtctttcaaacacctcgtagaaagtttttaatgcaatatc 18712
Query: 382 attcaattgattcgcaacatctggtttaggaaaaccaatcaattgcgggtggaaatccca 441
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 18713 attcaattgattcgcaacatctggtttaggaaaaccaatcaattgcgggt-gaaatccca 18771
Query: 442 ccattgtaaagctagggaataaatggatgcaagaattggcgccgtgagttcacgataaga 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18772 ccattgtaaagctagggaataaatggatgcaagaattggcgccgtgagttcacgataaga 18831
Query: 502 tcttgagtacttctccaaaaatactcgttcgtgtagaatgggaaagtaaggatgaatcag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18832 tcttgagtacttctccaaaaatactcgttcgtgtagaatgggaaagtaaggatgaatcag 18891
Query: 562 tttaaagaaaatttcaaccaatattttaccatgaggatgcactagtttttccactaaatc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18892 tttaaagaaaatttcaaccaatattttaccatgaggatgcactagtttttccactaaatc 18951
Query: 622 tatatcacgttgcttgcttcaagtaaagttcttgattaaaatcgtctcttaagatgaact 681
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18952 tatatcacgtt-cttgcttcaagtaaagttcttgattaaaatcgtctcttaagatgaact 19010
Query: 682 gtgcattgggagataccttgcgtagtgcgacattttttgataattgcacttgctcaatct 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19011 gtgcattgggagataccttgcgtagtgcgacattttttgataattgcacttgctcaatct 19070
Query: 742 tgtctagtttcatgtgatttgatagattattatcgaagatggatgtcgggcccacataat 801
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct: 19071 tgtctagtttcatgtgattgattagattaatatcgaagatggatgtcgggcccacaaaat 19130
Query: 802 aggaagaccttggattttgaatggtagactgaccataattaattttgacgttgtatgctc 861
|||||||||| |||| |||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct: 19131 aggaagacctgggatattgaatggaagactgagcataattaa-tttgacgttgtatgctc 19189
Query: 862 tgttgaccaaaaattaac-gttgcttgctgtctgggttgacctgaactcattccgtaatt 920
||||||||| || ||| | ||||| |||||| ||||||||||| |||||||||||||
Sbjct: 19190 tgttgaccagaagttagcggttgc-tgctgttgtggttgacctgagttcattccgtaatt 19248
Query: 921 gaactg 926
||||||
Sbjct: 19249 gaactg 19254
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6227
Number of Sequences: 1807
Number of extensions: 6227
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)