BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZD12RM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1757 1566 0.0
>3x_Contig1757
Length = 24754
Score = 1566 bits (790), Expect = 0.0
Identities = 903/934 (96%), Gaps = 5/934 (0%)
Strand = Plus / Minus
Query: 43 gcttgtatcatcattagttagattttttggcttaaaatataaactgtaaaagtgatttca 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 15255 gcttgtatcatcattagttagattcagtggcttaaaatataaactgtaaaagtgatttca 15196
Query: 103 ttcgtatatgaggtttttttgaagagttttttaaacattatatggtaccagtaccttctg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15195 ttcgtatatgaggtttttttgaagagttttttaaacattatatggtaccagtaccttctg 15136
Query: 163 ggattattatatcattgtgtagagttcaaccctcaattgacttacttttgaatctttt-a 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15135 ggattattatatcattgtgtagagttcaaccctcaattgacttacttttgaatctaaaga 15076
Query: 222 ctttatttgctgcgcgactggtttataaggtgtgctaatagagatctccaagacaaaaat 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15075 ctttatttgctgcgcgactggtttataaggtgtgctaatagagatctccaagacaaaaat 15016
Query: 282 acagataatgggaattgtgtccgtcgtgcaggatttcttctcgctagagactctagatca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15015 acagataatgggaattgtgtccgtcgtgcaggatttcttctcgctagagactctagatca 14956
Query: 342 acgtttgacggcacctacgaatgattctcgtcgtaaacagaaattggggccagaaattca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14955 acgtttgacggcacctacgaatgattctcgtcgtaaacagaaattggggccagaaattca 14896
Query: 402 atctagatggtcgtcattagaattcaaggcttattggttaatcttgtgtatagtgctacc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14895 atctagatggtcgtcattagaattcaaggcttattggttaatcttgtgtatagtgctacc 14836
Query: 462 gttgatgcttaaggcaggaatggatgctactaactcatggaattcaaactattacaagta 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14835 gttgatgcttaaggcaggaatggatgctactaactcatggaattcaaactattacaagta 14776
Query: 522 ccagcatttgttgagtaagggatggatgttcggaagaaaagttgataacagcgatgccca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14775 ccagcatttgttgagtaagggatggatgttcggaagaaaagttgataacagcgatgccca 14716
Query: 582 gtatagattttttagagataatctattgttactggtgggtctgatggtacttcatttatc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14715 gtatagattttttagagataatctattgttactggtgggtctgatggtacttcatttatc 14656
Query: 642 tatcaagaaagctgtgctccaatttaccaatgtacaaaaggtgacgtttgatttttggtt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14655 tatcaagaaagctgtgctccaatttaccaatgtacaaaaggtgacgtttgatttttggtt 14596
Query: 702 tgggttagttttcttaattggtgcacatggcgttaactgcttgcgcgttttgttccatgt 761
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 14595 tgggttagttttcttaattggtgcacatggcgtaaactgcttgcgcgttttgttccatgt 14536
Query: 762 tctagtaatgttcaccctagccaagacatttaagaaggcaagagcatttggcactttgag 821
||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||
Sbjct: 14535 tctagtaatgttcaccctagccaagacatttaagaggcaaagagcattggcaactttgag 14476
Query: 822 tgtgtggatatatggta-tggctcccttttcattaaccattcctatagaaactaacaata 880
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 14475 tgtgtggatatatggtattggctcccttttcattaacaattcctatagaaacttacaata 14416
Query: 881 ccggcagaatataccgtttttgaacacgtgggaccattcattt-aaggtattattgtaag 939
| | |||| |||||| || |||| ||| ||||||||||||| ||||||| |||| |||
Sbjct: 14415 cggccagataataccgcttctgaaaccgttggaccattcatttaaaggtatcattgaaag 14356
Query: 940 atgggac-ttttttacaa-tttacattattgaga 971
||||||| |||||||||| |||||||||||||||
Sbjct: 14355 atgggacgttttttacaattttacattattgaga 14322
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7193
Number of Sequences: 1807
Number of extensions: 7193
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)