BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE01RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1685 0.0
>3x_Contig1502
Length = 14970
Score = 1685 bits (850), Expect = 0.0
Identities = 897/908 (98%), Gaps = 4/908 (0%)
Strand = Plus / Minus
Query: 43 gcttgtggtagatgacattatagccttagtggcctgtgctgtagcttcgcgtacttcagg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9484 gcttgtggtagatgacattatagccttagtggcctgtgctgtagcttcgcgtacttcagg 9425
Query: 103 aactggatctcccaaattctttagaatgttcggtagaatctcaatcacgtatggctcgaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9424 aactggatctcccaaattctttagaatgttcggtagaatctcaatcacgtatggctcgaa 9365
Query: 163 aaacttccctagaacaagagataggcactcgaacccatatgcaaccgattcacggcagcg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9364 aaacttccctagaacaagagataggcactcgaacccatatgcaaccgattcacggcagcg 9305
Query: 223 tgggtcttttttatcttcggatccttcgattaagctgcgaataacatcaaagtctgaaag 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9304 tgggtcttttttatcttcggatccttcgattaagctgcgaataacatcaaagtctgaaag 9245
Query: 283 agcagaaataccgtacccctttactaaaccagcaataccccaagcagcacctcttctaat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9244 agcagaaataccgtacccctttactaaaccagcaataccccaagcagcacctcttctaat 9185
Query: 343 ttggtttggtgcaggtgagtcaaataatgcttgcaaagagaagtcaatgtattcttgggc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9184 ttggtttggtgcaggtgagtcaaataatgcttgcaaagagaagtcaatgtattcttgggc 9125
Query: 403 agagctctggaataagggaaccaaagcagataaacattttgaaattgatttttgtaattc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9124 agagctctggaataagggaaccaaagcagataaacattttgaaattgatttttgtaattc 9065
Query: 463 ttctgatggagtttgaagggagcttaacaaacgctcagcaatggttctaattcttggatc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9064 ttctgatggagtttgaagggagcttaacaaacgctcagcaatggttctaattcttggatc 9005
Query: 523 atcttgcttcaagtgtctagctagagaaccatatagaataacgacattttctttcatcaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9004 atcttgcttcaagtgtctagctagagaaccatatagaataacgacattttctttcatcaa 8945
Query: 583 aacatcagtagaagaagacaaaaagttttcaaatattggcatcaaatcttgcaaatactt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8944 aacatcagtagaagaagacaaaaagttttcaaatattggcatcaaatcttgcaaatactt 8885
Query: 643 actaccgtggtagttaatgatttcgataccagcttctttcatctcctggcgaacaatttc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8884 actaccgtggtagttaatgatttcgataccagcttctttcatctcctggcgaacaatttc 8825
Query: 703 ctctctatcacctaatgctccagaatcaatgaggaaatgtacgaattcaacaacagcacc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8824 ctctctatcacctaatgctccagaatcaatgaggaaatgtacgaattcaacaacagcacc 8765
Query: 763 aggactggaactaaatgcacggcaaagttctttcagtgcaatggcagtagtacttcttgc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8764 aggactggaactaaatgcacggcaaagttctttcagtgcaatggcagtagtacttcttgc 8705
Query: 823 tttcc-agggtccttttgctctgttgcactngatttaaccaaaccgtagtcatcaagaat 881
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8704 ttcccaagggtccttttgctctgttgcactgattttaaccaaaccgtagtcatcaagaat 8645
Query: 882 atnctttagaggttctgacttc-aagcataaaagttc-atagttcgtggaagtaac-gtt 938
|| ||| |||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct: 8644 atccttaggaggttctgacttcaaagcataaaagttcaatagttcgtggaagtaacggtt 8585
Query: 939 gaatgaat 946
||||||||
Sbjct: 8584 gaatgaat 8577
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7470
Number of Sequences: 1807
Number of extensions: 7470
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)