BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE02FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1554 0.0
3x_Contig1493 139 1e-32
>3x_Contig1571
Length = 13536
Score = 1554 bits (784), Expect = 0.0
Identities = 825/832 (99%), Gaps = 5/832 (0%)
Strand = Plus / Plus
Query: 87 ctaccactcttgatgccgatgaacttgaaactgtcactttgactttgtctaagaatggtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12357 ctaccactcttgatgccgatgaacttgaaactgtcactttgactttgtctaagaatggtc 12416
Query: 147 actggttcactaagaccgtcactcaaactaagggtttcgtctggaccggtgaaccatcta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12417 actggttcactaagaccgtcactcaaactaagggtttcgtctggaccggtgaaccatcta 12476
Query: 207 gatcggctgccacaacctccgctgaagaaacttcttctactgaagaagcctctaccactg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12477 gatcggctgccacaacctccgctgaagaaacttcttctactgaagaagcctctaccactg 12536
Query: 267 aatacgaaactaagactctaactttgtccaagaacggtcactggttcactaagactgtca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12537 aatacgaaactaagactctaactttgtccaagaacggtcactggttcactaagactgtca 12596
Query: 327 cccagccggttggtttcgtctggaccggtgaagcaactacctacactggtgttgctccat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12597 cccagccggttggtttcgtctggaccggtgaagcaactacctacactggtgttgctccat 12656
Query: 387 gggctagtagttctgctgaagaggcctcttcaactgaagaagcctctaccactcttgatg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12657 gggctagtagttctgctgaagaggcctcttcaactgaagaagcctctaccactcttgatg 12716
Query: 447 ccgatgaacttgaaactgtcactttgactttgtctaagaatggtcattggttcactaaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12717 ccgatgaacttgaaactgtcactttgactttgtctaagaatggtcattggttcactaaga 12776
Query: 507 ccgtcactcaaactaagggtttcgtatggaccggcgaaccatctagatcagctactgcat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12777 ccgtcactcaaactaagggtttcgtatggaccggcgaaccatctagatcagctactgcat 12836
Query: 567 cttctgatgattctaacgatgacattacctcttactcaaactctaccgcatcagcaactg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12837 cttctgatgattctaacgatgacattacctcttactcaaactctaccgcatcagcaactg 12896
Query: 627 attccacagatggccaatcctctgttagcattgaaactcaaactgtcaccgacaagtcta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12897 attccacagatggccaatcctctgttagcattgaaactcaaactgtcaccgacaagtcta 12956
Query: 687 gtaccacagctaccatcacttcatgttcagaaggggtctgtcacacaaccactctagagc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12957 gtaccacagctaccatcacttcatgttcagaaggggtctgtcacacaaccactctagagc 13016
Query: 747 catctgcttctactgttgtcaccactgttgttgatggtgttaccattgttaccaccgtcc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13017 catctgcttctactgttgtcaccactgttgttgatggtgttaccattgttaccaccgtcc 13076
Query: 807 catgtacgaccacttctaccgttgaatgtaccgaggaacaatgccaaaaga-caaggaaa 865
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 13077 catgtacgaccacttctaccgttgaatgtaccgaggaacaatgccaaaagaccaaggaaa 13136
Query: 866 c-gttttcaccaagg-aacagtat-caccaaggaa-cgggatctactgtctt 913
| |||| |||||||| |||||||| |||||||||| ||| ||||||||||||
Sbjct: 13137 cagtttccaccaaggaaacagtatccaccaaggaaccggaatctactgtctt 13188
Score = 301 bits (152), Expect = 1e-81
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 257 tctaccactgaatacgaaactaagactctaactttgtccaagaacggtcactggttcact 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12200 tctaccactgaatacgaaactaagactctaactttgtccaagaacggtcactggttcact 12259
Query: 317 aagactgtcacccagccggttggtttcgtctggaccggtgaagcaactacctacactggt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12260 aagactgtcacccagccggttggtttcgtctggaccggtgaagcaactacctacactggt 12319
Query: 377 gttgctccatgggctagtagttctgctgaaga 408
||||||||||||||||||||||||||||||||
Sbjct: 12320 gttgctccatgggctagtagttctgctgaaga 12351
Score = 238 bits (120), Expect = 2e-62
Identities = 132/136 (97%)
Strand = Plus / Plus
Query: 420 ctgaagaagcctctaccactcttgatgccgatgaacttgaaactgtcactttgactttgt 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12345 ctgaagaagcttctaccactcttgatgccgatgaacttgaaactgtcactttgactttgt 12404
Query: 480 ctaagaatggtcattggttcactaagaccgtcactcaaactaagggtttcgtatggaccg 539
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12405 ctaagaatggtcactggttcactaagaccgtcactcaaactaagggtttcgtctggaccg 12464
Query: 540 gcgaaccatctagatc 555
| ||||||||||||||
Sbjct: 12465 gtgaaccatctagatc 12480
>3x_Contig1493
Length = 12243
Score = 139 bits (70), Expect = 1e-32
Identities = 124/142 (87%)
Strand = Plus / Plus
Query: 251 gaagcctctaccactgaatacgaaactaagactctaactttgtccaagaacggtcactgg 310
||||| || ||||||||||||||||| ||| | |||||||| |||||||||||||||
Sbjct: 10892 gaagcttccaccactgaatacgaaaccgtcactttgactttgtctaagaacggtcactgg 10951
Query: 311 ttcactaagactgtcacccagccggttggtttcgtctggaccggtgaagcaactacctac 370
||||| ||||| |||||||| | || |||||||||||||| |||||||| || ||||||
Sbjct: 10952 ttcaccaagaccgtcacccaagcagtcggtttcgtctggactggtgaagctaccacctac 11011
Query: 371 actggtgttgctccatgggcta 392
||||||||||||||||||||||
Sbjct: 11012 actggtgttgctccatgggcta 11033
Score = 105 bits (53), Expect = 2e-22
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 782 ggtgttaccattgttaccaccgtcccatgtacgaccacttctaccgttgaatgtaccgag 841
||||||||| |||| |||||||||||||| || |||||||||||||| |||||||||||
Sbjct: 11216 ggtgttaccgttgtaaccaccgtcccatgcaccaccacttctaccgtcgaatgtaccgaa 11275
Query: 842 gaacaatgccaaaagac 858
|||||||||||||||||
Sbjct: 11276 gaacaatgccaaaagac 11292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5119
Number of Sequences: 1807
Number of extensions: 5119
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)