BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE02RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1548 1697 0.0
>3x_Contig1548
Length = 9830
Score = 1697 bits (856), Expect = 0.0
Identities = 890/901 (98%), Gaps = 1/901 (0%)
Strand = Plus / Plus
Query: 43 gcttgtgggcagggtgtaagcttagaaaaagacagaatcatagcaattttgccagtacct 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gcttgtgggcagggtgtaagcttagaaaaagacagaatcatagcaattttgccagtacct 228
Query: 103 actgtcaacatcttcgaatgagggctctatcaaaatatatgcctttgtttataaactcat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 actgtcaacatcttcgaatgagggctctatcaaaatatatgcctttgtttataaactcat 288
Query: 163 ctgtccaacttttggcattattctggttatgtaaactgaaactcttttcaattttataat 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 289 ctgtccaacttttggcattattctggttatgtaaactgaaactcttttcaatatgaaaat 348
Query: 223 ggcgtaataaaaatattcataacaggtacttgtcatatcgaacaagattgagttttgttc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggcgtaataaaaatattcataacaggtacttgtcatatcgaacaagattgagttttgttc 408
Query: 283 gatgcaacgaagagagtaaggatctaatggtgtcgaatcatatgccagagagattgttca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gatgcaacgaagagagtaaggatctaatggtgtcgaatcatatgccagagagattgttca 468
Query: 343 tagtggatcatgtcagtagaaattgattgggataatatccgtggggatttaagcgttaat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tagtggatcatgtcagtagaaattgattgggataatatccgtggggatttaagcgttaat 528
Query: 403 caaggtgtgaaggactttttaaactctcggctacaagagtttgaactgcccagttacgtg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 caaggtgtgaaggactttttaaactctcggctacaagagtttgaactgcccagttacgtg 588
Query: 463 aataatcttaaggtaactaatttcgatttaggtactatgcctccaaatgttatattaaaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aataatcttaaggtaactaatttcgatttaggtactatgcctccaaatgttatattaaaa 648
Query: 523 cagatggatgatcctttagatgagttttattcttatctgttacaagaaggagatatttca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cagatggatgatcctttagatgagttttattcttatctgttacaagaaggagatatttca 708
Query: 583 aaagaagctgcgaaggataagaacactgatgtgcaactattagtggaacttgattataaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aaagaagctgcgaaggataagaacactgatgtgcaactattagtggaacttgattataaa 768
Query: 643 ggtgatatgagcattgaattgtcagctgatcttgttcttaattacccgagcccgcagttc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ggtgatatgagcattgaattgtcagctgatcttgttcttaattacccgagcccgcagttc 828
Query: 703 atgattttaccagttaagctacgaataagtgatattggcatgcactgcttatgcctgctc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 atgattttaccagttaagctacgaataagtgatattggcatgcactgcttatgcctgctc 888
Query: 763 gcatatttgaagaaacagctntttattangttcctatgtgatgttagtgatccgctattg 822
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 889 gcatatttgaagaaacagctttttattagtttcctatgtgatgttagtgatccgctattg 948
Query: 823 gagaatgataaattacaggtagaccccagtggaccaaatttcatggggaaacgagcatta 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 gagaatgataaattacaggtagaccccagtggaccaaatttcatggggaaacgagcatta 1008
Query: 883 gagaggatttcactaatttagaatatcaaaa-ccatacngaattgggtcagctggatcaa 941
|||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct: 1009 gagaggatttcactaattagaaatatcaaaatccatacggaattgggtcagctggatcaa 1068
Query: 942 g 942
|
Sbjct: 1069 g 1069
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7125
Number of Sequences: 1807
Number of extensions: 7125
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)